View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_66 (Length: 214)

Name: NF3863_low_66
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_66
NF3863_low_66
[»] chr8 (3 HSPs)
chr8 (40-193)||(16686260-16686413)
chr8 (40-193)||(20863836-20863989)
chr8 (54-193)||(1674226-1674365)
[»] chr6 (28 HSPs)
chr6 (40-182)||(4557111-4557253)
chr6 (40-193)||(4570958-4571111)
chr6 (46-193)||(4585628-4585775)
chr6 (54-188)||(4480693-4480827)
chr6 (40-119)||(4606958-4607037)
chr6 (60-193)||(4504390-4504523)
chr6 (40-193)||(4579418-4579571)
chr6 (50-193)||(4592227-4592370)
chr6 (54-188)||(4516321-4516455)
chr6 (51-185)||(4563708-4563842)
chr6 (43-124)||(4560495-4560576)
chr6 (49-186)||(4598166-4598303)
chr6 (57-193)||(3171744-3171880)
chr6 (49-193)||(4613711-4613855)
chr6 (54-185)||(4505857-4505988)
chr6 (51-185)||(4574305-4574439)
chr6 (57-193)||(4267159-4267295)
chr6 (54-193)||(4515114-4515253)
chr6 (54-138)||(4492955-4493039)
chr6 (54-185)||(4617022-4617153)
chr6 (58-125)||(4392087-4392154)
chr6 (60-193)||(4490348-4490481)
chr6 (57-113)||(4299813-4299869)
chr6 (77-125)||(4568076-4568124)
chr6 (54-113)||(4601789-4601848)
chr6 (54-185)||(4461123-4461254)
chr6 (57-116)||(4622145-4622204)
chr6 (60-185)||(4469809-4469934)
[»] chr5 (2 HSPs)
chr5 (57-193)||(24103002-24103138)
chr5 (54-193)||(28000092-28000231)
[»] scaffold0288 (1 HSPs)
scaffold0288 (57-188)||(3717-3848)
[»] scaffold0477 (1 HSPs)
scaffold0477 (57-115)||(4757-4815)
[»] chr3 (1 HSPs)
chr3 (54-124)||(1281114-1281184)
[»] chr7 (1 HSPs)
chr7 (60-113)||(3086426-3086479)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 16686413 - 16686260
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||    
T  16686413 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttca 16686314  T
Q  140 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatca 193  Q
    | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  16686313 tttgcagttcaattatctttttcctcatcttctttcctttctctcccaccatca 16686260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 20863989 - 20863836
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 139  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||| |||  | ||||||||||| || || ||||||     
T  20863989 gtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttct 20863890  T
Q  140 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatca 193  Q
    ||||||  ||| || |||||| | ||||| || |||||||||||||||| ||||    
T  20863889 tcttcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatca 20863836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 1674226 - 1674365
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||  || || |||||| |||||| ||| ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  154 atctttttcttcatcttctttcctttctctcccactatca 193  Q
      ||||| | ||||||| ||||| ||||||||||| ||||    
T  1674326 gccttttgcctcatcttttttccattctctcccaccatca 1674365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 4557111 - 4557253
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || || ||||||     
T  4557111 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 4557210  T
Q  140 tcttcagttcaattatctttttcttcatcttctttcctttctc 182  Q
    ||||||  |||||||||||||||  ||||||||||||||||||    
T  4557211 tcttcatctcaattatctttttccacatcttctttcctttctc 4557253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 4570958 - 4571111
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 139  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||     
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T
Q  140 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatca 193  Q
    ||||||  || ||||| |||||| |||||||||||||||| |||||||| ||||    
T  4571058 tcttcatctccattatatttttcctcatcttctttcctttatctcccaccatca 4571111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 4585628 - 4585775
Alignment:
Q  46 taggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttca 145  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || || |||||| ||||||    
T  4585628 taggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttca 4585727  T
Q  146 gttcaattatctttttcttcatcttctttcctttctctcccactatca 193  Q
      || |||  ||||| | ||||||||||||| ||||||||||| ||||    
T  4585728 actcgattgccttttgcctcatcttctttccattctctcccaccatca 4585775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 4480693 - 4480827
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || || ||| || ||||||  || ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  154 atctttttcttcatcttctttcctttctctcccac 188  Q
      ||||| |||||||||||||||||||||||||||    
T  4480793 gccttttgcttcatcttctttcctttctctcccac 4480827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 4607037 - 4606958
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtct 119  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||    
T  4607037 gtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtct 4606958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 4504523 - 4504390
Alignment:
Q  60 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 159  Q
    ||||||||| || ||| |||||||||| ||||||||||||||||||||||||||| |||||||||| || || |||||| ||||||  || ||   ||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  160 ttcttcatcttctttcctttctctcccactatca 193  Q
    | | ||||||||||||||||||||||||| ||||    
T  4504423 tgcctcatcttctttcctttctctcccaccatca 4504390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 4579418 - 4579571
Alignment:
Q  40 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 139  Q
    |||||||| ||| |||||||||| || || |||||| |||||||||| |||||||||||||||||||| || |||||||| ||||| || ||  |||||     
T  4579418 gtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct 4579517  T
Q  140 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatca 193  Q
    ||||||  ||||||  ||||| | ||||||||||| ||||||||||||| ||||    
T  4579518 tcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatca 4579571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 4592227 - 4592370
Alignment:
Q  50 tttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttc 149  Q
    ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||| ||||  || || |||||| ||||||  ||    
T  4592227 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactc 4592326  T
Q  150 aattatctttttcttcatcttctttcctttctctcccactatca 193  Q
     |||  ||||||| ||||||||||||||||||||||||| ||||    
T  4592327 gattgcctttttcctcatcttctttcctttctctcccaccatca 4592370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 4516321 - 4516455
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||  |||||||||||||| ||||||||||| || || |||||| |||||| ||| ||     
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg 4516420  T
Q  154 atctttttcttcatcttctttcctttctctcccac 188  Q
      ||||| | |||||||||||||||| ||||||||    
T  4516421 gccttttgcctcatcttctttcctttatctcccac 4516455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 4563708 - 4563842
Alignment:
Q  51 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttca 150  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||  | ||| ||||||  |||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T
Q  151 attatctttttcttcatcttctttcctttctctcc 185  Q
    |||  ||||| |  |||||||||||||||||||||    
T  4563808 attgccttttgccgcatcttctttcctttctctcc 4563842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 4560495 - 4560576
Alignment:
Q  43 acttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgt 124  Q
    ||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgt 4560576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 4598166 - 4598303
Alignment:
Q  49 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagtt 148  Q
    |||||||| |||||||| || |||||| |||||||||| || |||||||||||||||||||| ||| |||| || || || || |||||||||||||  |    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaat 4598265  T
Q  149 caattatctttttcttcatcttctttcctttctctccc 186  Q
    ||||| |||||| | |||| ||||||||||| ||||||    
T  4598266 caattgtcttttgcctcattttctttcctttatctccc 4598303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 3171744 - 3171880
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 156  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||  |||||| || || || |||||| ||||||  || ||   |    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc 3171843  T
Q  157 tttttcttcatcttctttcctttctctcccactatca 193  Q
     ||| | ||||||||||||||||||||||||| ||||    
T  3171844 ctttgcctcatcttctttcctttctctcccaccatca 3171880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 4613855 - 4613711
Alignment:
Q  49 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagtt 148  Q
    |||||||||||||| ||||  |||||  | |||||||| ||||||||||| ||||||||||| || ||||| ||||| || || |||||| ||||||  |    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaact 4613756  T
Q  149 caattatctttttcttcatcttctttcctttctctcccactatca 193  Q
    |||||  ||||| | |||| |||||||||||||||||||| ||||    
T  4613755 caattgccttttgcctcattttctttcctttctctcccaccatca 4613711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 4505857 - 4505988
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||||| || || |  ||| || | ||||  || ||     
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg 4505956  T
Q  154 atctttttcttcatcttctttcctttctctcc 185  Q
    | ||||||| ||||||| ||||||||||||||    
T  4505957 acctttttcctcatcttgtttcctttctctcc 4505988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 4574305 - 4574439
Alignment:
Q  51 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttca 150  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||  ||||||||||||| |||||||| |||||  | ||  ||||| ||||||| |||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T
Q  151 attatctttttcttcatcttctttcctttctctcc 185  Q
    ||    |||| | |||||||||||||||| |||||    
T  4574405 atggctttttgcctcatcttctttcctttatctcc 4574439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 4267295 - 4267159
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 156  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||  || || |||||| ||||||  || |  |      
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagaca 4267196  T
Q  157 tttttcttcatcttctttcctttctctcccactatca 193  Q
    |||| ||||||| | ||||||||||||||||| ||||    
T  4267195 ttttgcttcatcatatttcctttctctcccaccatca 4267159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 4515253 - 4515114
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| |||||| | |||||||| |||||||||| ||||||| | || ||| |||| ||||| ||||| |||||| | ||||  || ||     
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata 4515154  T
Q  154 atctttttcttcatcttctttcctttctctcccactatca 193  Q
    | ||||||| |||| || ||||||||||||||||| ||||    
T  4515153 acctttttcctcattttatttcctttctctcccaccatca 4515114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 4492955 - 4493039
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttc 138  Q
    ||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||||||||||  |||||| || || ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttc 4493039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 4617022 - 4617153
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| || ||| |||| ||||| | |||||||||||||||||||||||| ||||| ||||  || || |||||| ||||||  || ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  154 atctttttcttcatcttctttcctttctctcc 185  Q
      ||||| |||||| ||||||||||| |||||    
T  4617122 gccttttgcttcattttctttcctttatctcc 4617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 4392154 - 4392087
Alignment:
Q  58 tgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtc 125  Q
    ||||||||||| |||||| |||||| ||| |||||||||||| ||||| |||||||||||| ||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtc 4392087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 4490481 - 4490348
Alignment:
Q  60 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 159  Q
    ||||||||  || ||| |||||||||| ||||||||||||||||||| ||||||  |||| ||||| ||  | |||||| ||||||  ||  |   ||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt 4490382  T
Q  160 ttcttcatcttctttcctttctctcccactatca 193  Q
    | | ||||||||||||||||||||||||| ||||    
T  4490381 tgcctcatcttctttcctttctctcccaccatca 4490348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 4299869 - 4299813
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 113  Q
    ||||||||||| ||||||| |||| ||||| |||||||||||||| |||||||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacc 4299813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 4568076 - 4568124
Alignment:
Q  77 taatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtc 125  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||    
T  4568076 taatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtc 4568124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 4601789 - 4601848
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 113  Q
    ||||||||||||||| |||||| |||| ||||| |||| |||| ||||||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacc 4601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 4461123 - 4461254
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||||||| || ||| |||| ||||| ||||||||| ||||||||  ||| |||||||| || || || ||  ||||| |||| | ||| ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  154 atctttttcttcatcttctttcctttctctcc 185  Q
    | ||||| | |||||||||||||  |||||||    
T  4461223 accttttgcctcatcttctttccaatctctcc 4461254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 4622145 - 4622204
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccagg 116  Q
    |||||||||||  |||||| |||| ||||| ||||||||  |||||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 4469809 - 4469934
Alignment:
Q  60 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 159  Q
    ||||||||| || ||| |||| ||||| ||||||||| ||||||||  ||| |||||||| || || || ||  ||||| |||| |  || || ||||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt 4469908  T
Q  160 ttcttcatcttctttcctttctctcc 185  Q
    | | ||||||||||||| ||||||||    
T  4469909 tccctcatcttctttccattctctcc 4469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 24103002 - 24103138
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 156  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| ||||||||| ||||||||  || || |||||| |||| |  || |  | |    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagacc 24103101  T
Q  157 tttttcttcatcttctttcctttctctcccactatca 193  Q
    |||| ||||||| ||||||| ||||||||||| ||||    
T  24103102 ttttgcttcatcgtctttccgttctctcccaccatca 24103138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 28000231 - 28000092
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 153  Q
    ||||||||||| ||| || ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||  || || |||||  ||||||  || ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  154 atctttttcttcatcttctttcctttctctcccactatca 193  Q
      ||||| | ||||||| ||||| ||||||||||| ||||    
T  28000131 gccttttgcctcatcttttttccattctctcccaccatca 28000092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 3848 - 3717
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 156  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||||||| |||||| ||||| ||||  || || |||||| |||| |  || |    |    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T
Q  157 tttttcttcatcttctttcctttctctcccac 188  Q
    |||| | |||||||||||||||||||||||||    
T  3748 ttttgcctcatcttctttcctttctctcccac 3717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 4815 - 4757
Alignment:
Q  57 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccag 115  Q
    |||||||||||  |||||| |||||||||| |||||||||||||||||||| |||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccag 4757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 1281114 - 1281184
Alignment:
Q  54 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgt 124  Q
    ||||||||||||||| |  ||| |||||||||| || ||||||||||||||||||||||| ||||| ||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgt 1281184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  60 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 113  Q
    ||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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