View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_9 (Length: 506)

Name: NF3863_low_9
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_9
NF3863_low_9
[»] chr1 (16 HSPs)
chr1 (13-490)||(8868281-8868773)
chr1 (105-490)||(8864045-8864433)
chr1 (25-298)||(9099937-9100210)
chr1 (103-298)||(8971932-8972124)
chr1 (103-298)||(9006960-9007152)
chr1 (23-201)||(9136720-9136895)
chr1 (371-490)||(9136407-9136526)
chr1 (369-471)||(8972210-8972312)
chr1 (129-296)||(9093565-9093723)
chr1 (369-490)||(9007250-9007371)
chr1 (18-252)||(9072447-9072678)
chr1 (369-482)||(9093377-9093490)
chr1 (116-294)||(9065209-9065387)
chr1 (448-490)||(9072200-9072242)
chr1 (436-474)||(9065556-9065594)
chr1 (401-474)||(9099743-9099816)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 8868773 - 8868281
Alignment:
Q  13 aatatgacgcaaccatgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagac 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8868773 aatatgacgcaaccacgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaaccacttcatttccttgcaagtttctcaaccaagac 8868674  T
Q  113 gttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctcc 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8868673 gttggagtaaccaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataatacccttgggatttagagctcc 8868574  T
Q  213 aattgagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggcat---aa-- 307  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||      
T  8868573 aattgagacatgaagaaatattcacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggcattggaacc 8868474  T
Q  308 ----------cctcctcctgctgtggcttggtatggatctgtgcaatatttgtccacgtaattgtatcttacacagaaatcagattgagtcaagaaatag 397  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8868473 tcctcctcctcctcctcctgctgtggcttggtatggatctgtgcaatatttgtccacgtaattgtatcttacacagaaatcagattgagtcaagaaatag 8868374  T
Q  398 agaggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagttgatggatttcacataatatttt 490  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  8868373 agaggaaatgaagaacaattatcttgttgaattccaatatcaaccaatcggattatgaaattgttgtagttgatggatttcacataatatttt 8868281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 105 - 490
Target Start/End: Complemental strand, 8864433 - 8864045
Alignment:
Q  105 accaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggattt 204  Q
    ||||||| ||||||||||| ||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8864433 accaagaagttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataataccctttggattt 8864334  T
Q  205 agagctccaattgagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggca 304  Q
     ||| || |||| ||||||||||||||||  |||||||||||| |||| |||||| ||||  | |||||||||||||||||||||||||||||| |||||    
T  8864333 ggagttcaaattcagacatgaagaagtattcacatatttaggactgttagtcacttgatggctgcaattcaagtaaactatatgctcaaaaagaagggca 8864234  T
Q  305 ---taacctcctcctgctgtggcttggtatggatctgtgcaatatttgtccacgtaattgtatcttacacagaaatcagattgagtcaagaaatagagag 401  Q
         | || || || |   |||||||||||||||  |||||| ||||||| | || | |||  |  |||| ||||| ||| ||| |||||||||| |||    
T  8864233 cttggatcttcttctaccacggcttggtatggatccttgcaatgtttgtcctcatattcgtaagtatcacaaaaatccgatcgagacaagaaatagcgag 8864134  T
Q  402 gaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagttgatggatttcacataatatttt 490  Q
    |||||||||| ||||||   ||||||| |||   |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8864133 gaagtgaagagcaattagattgttgaactccgggatcaaccagtctgattgtgaaattgttgtagttgatggattgcacatgatatttt 8864045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 9100210 - 9099937
Alignment:
Q  25 ccatgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagacgttggagtaact 124  Q
    |||||||||||||||||||||| ||||||||||  |||| | |||||| ||||  |||| ||||| |||||| |||| |||||| || || ||||  |||    
T  9100210 ccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaatttcccaaccatgaagtgggagccact 9100111  T
Q  125 aacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaattgagacatg 224  Q
    ||| || |||||||||||||||||||||| | ||||| ||| | |||||| ||||||||||||||||||||||||||||| ||| || |||| || || |    
T  9100110 aacttcgcatgacaaccaacttgaaaatcttgagcaactaatttaccagcaatagcataaatataataccctttggatttggagttcgaattaaggcaag 9100011  T
Q  225 aagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga 298  Q
    | |||| ||  ||||||||| |||||||  ||||| ||||||||||||||| ||||||||||||||||||||||    
T  9100010 atgaagcattcacatatttatgattgttaatcacttgatgagtacaattcatgtaaactatatgctcaaaaaga 9099937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 8971932 - 8972124
Alignment:
Q  103 caaccaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggat 202  Q
    |||| |||| ||||||||||| ||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||  | ||||||     
T  8971932 caacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataattacttttggag 8972031  T
Q  203 ttagagctccaatt-gagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga 298  Q
    | |     | |||| || ||| ||||||||||  ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||    
T  8972032 taa----ccaaattggaaacaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaaga 8972124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 9006960 - 9007152
Alignment:
Q  103 caaccaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggat 202  Q
    |||| |||| ||||||||||| ||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||  | ||||||     
T  9006960 caacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataattacttttggag 9007059  T
Q  203 ttagagctccaatt-gagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga 298  Q
    | |     | |||| || ||| ||||||||||  ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||    
T  9007060 taa----ccaaattggaaacaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaaga 9007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 9136895 - 9136720
Alignment:
Q  23 aaccatgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagacgttggagtaa 122  Q
    |||||||||| ||||||||||||  ||||||||||  |||| |||||||| | ||  | || ||||| ||||||    | | ||||||| ||| ||||||    
T  9136895 aaccatgaaacctcaaatccatacactaacgccttatgaatgacatcatatgtaagtaattgatttctttgcaaa---cccgaccaagaagttagagtaa 9136799  T
Q  123 ctaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttgga 201  Q
    || |  |||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||    
T  9136798 ctgatttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaatagaataccctttgga 9136720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 9136526 - 9136407
Alignment:
Q  371 cagaaatcagattgagtcaagaaatagagaggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagttga 470  Q
    ||||||| |||| ||| |||  ||||||||||||||||||| ||||||   ||||||| ||||  ||||||||||| ||||||||||| |||||||||||    
T  9136526 cagaaattagatcgagacaaagaatagagaggaagtgaagagcaattagattgttgaactccaggatcaaccaatcggattgtgaaatcgttgtagttga 9136427  T
Q  471 tggatttcacataatatttt 490  Q
    |||| | |||||||||||||    
T  9136426 tggactgcacataatatttt 9136407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 8972210 - 8972312
Alignment:
Q  369 cacagaaatcagattgagtcaagaaatagagaggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagtt 468  Q
    ||||||||| |||| ||| |||  ||||||||||||||||||| ||||||   ||||||||||||  ||||||||||| |||||||||||||||||||||    
T  8972210 cacagaaattagatcgagacaacgaatagagaggaagtgaagagcaattagattgttgaattccaggatcaaccaatcggattgtgaaattgttgtagtt 8972309  T
Q  469 gat 471  Q
    |||    
T  8972310 gat 8972312  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 296
Target Start/End: Complemental strand, 9093723 - 9093565
Alignment:
Q  129 tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaattgagacatgaaga 228  Q
    |||||||||||||||||||||| || ||  |||||||||||||||||||||||||||   | || ||||||||||  |||      |||||||| |||||    
T  9093723 tcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa---agtagcctttggattgcgag------ttgagacaggaaga 9093633  T
Q  229 agtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaa 296  Q
    |||||  |||||||||| |||||||||||| |||||  ||||||| | ||| |||||||||| |||||    
T  9093632 agtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa 9093565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 9007250 - 9007371
Alignment:
Q  369 cacagaaatcagattgagtcaagaaatagagaggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagtt 468  Q
    ||||||||| |||||||| |||  |||| ||||| |  ||||| ||||||   ||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  9007250 cacagaaattagattgagacaaagaataaagaggtatagaagagcaattagattgttgaactccaagatcaaccaatcggattgtgaaattgttgtagtt 9007349  T
Q  469 gatggatttcacataatatttt 490  Q
    |||||||| ||||| |||||||    
T  9007350 gatggattgcacatgatatttt 9007371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 9072678 - 9072447
Alignment:
Q  18 gacgcaaccatgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagacgttgg 117  Q
    ||||||||||||||||||||||||||||  |||| |||||  | ||  ||||||| || |  |||| ||||||||||||     ||||   ||| || ||    
T  9072678 gacgcaaccatgaaatctcaaatccatacactaatgccttttgtatttcatcatatgatattacttgatttccttgcaaacccttcaa---agaagtggg 9072582  T
Q  118 agtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctcc-aatt 216  Q
    |||||  ||  ||||||||||||||||||| ||||| |||||| ||| || |||||| ||||||||||||||||| ||||| ||||| || ||||  | |    
T  9072581 agtaataaatttcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaatataatagccttttgatttgga-ctcctgagt 9072483  T
Q  217 gagacatgaagaagtatcaacatatttaggattgtt 252  Q
    |||||| ||||||||||  |||||||||||||||||    
T  9072482 gagacaggaagaagtattcacatatttaggattgtt 9072447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 482
Target Start/End: Complemental strand, 9093490 - 9093377
Alignment:
Q  369 cacagaaatcagattgagtcaagaaatagagaggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagtt 468  Q
    ||||||||||||||  || |||| ||| | |||||| |||||| |||||||| ||||||||||||  ||| || |  |||||||||||||||||||||||    
T  9093490 cacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagtt 9093391  T
Q  469 gatggatttcacat 482  Q
    |||||| |||||||    
T  9093390 gatggacttcacat 9093377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 9065209 - 9065387
Alignment:
Q  116 ggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaat 215  Q
    |||||||| ||  |||||||||||||||||||||| || |||||  ||||||||||| | ||||||||||||||||  ||||||||||| |||   | ||    
T  9065209 ggagtaaccaatttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaatataattgcctttggatttggagtgtcgat 9065308  T
Q  216 tgagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaa 294  Q
    ||||||| |  ||||||   ||||| || | |||| | || ||| |||  |||||| ||| ||||||||||||||||||    
T  9065309 tgagacaaggtgaagtaatcacatagttggaattgctagtgacttgattggtacaactcaggtaaactatatgctcaaa 9065387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 9072242 - 9072200
Alignment:
Q  448 gattgtgaaattgttgtagttgatggatttcacataatatttt 490  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  9072242 gattgtgaaattgttgtagttgatggattgcacataatatttt 9072200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 9065556 - 9065594
Alignment:
Q  436 atcaaccaatctgattgtgaaattgttgtagttgatgga 474  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  9065556 atcaaccagtctgattgtaaaattgttgtagttgatgga 9065594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 9099816 - 9099743
Alignment:
Q  401 ggaagtgaagaacaattatcatgttgaattccaatatcaaccaatctgattgtgaaattgttgtagttgatgga 474  Q
    ||||||||||| ||||||   ||||||| | ||  |||||| |||| |||||||||||| ||||||||||||||    
T  9099816 ggaagtgaagagcaattagattgttgaacttcaggatcaactaatcggattgtgaaattattgtagttgatgga 9099743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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