View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_high_12 (Length: 249)
Name: NF3864_high_12
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44013271 - 44013031
Alignment:
| Q |
1 |
agattggtaaaagggtcacataagtatggtcggtcagatggtaaaagaccacaaaaatatttgataagttaggactcggcaagtgttt-gtgaatttcac |
99 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44013271 |
agattggtaaaaggatcacataagtatggtcggtcagatggtaaaaaaccgcagaaacatttgataagttaggactcggcaagtgttttgtgaatttcac |
44013172 |
T |
|
| Q |
100 |
tactaaactcttctgnnnnnnnnnnnnnnnnnnnnncttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttat |
199 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013171 |
tactagactcttctgaaaaggaaaaaaaatcaaaaacttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttat |
44013072 |
T |
|
| Q |
200 |
ttatggttatttattgaaggacattttattagttccctatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013071 |
ttatggttatttattgaaggacattttattagttccctatg |
44013031 |
T |
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