View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3864_high_4 (Length: 528)
Name: NF3864_high_4
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 511
Target Start/End: Complemental strand, 31040357 - 31039834
Alignment:
| Q |
7 |
taaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatctttttgattgtggatttagaactgagat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31040357 |
taaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatctttt-gattgtggatttagaactgagat |
31040259 |
T |
|
| Q |
107 |
caagaccaagacacgtacataataatatactataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040258 |
caagaccaagacacgtacataataatatactataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaat |
31040159 |
T |
|
| Q |
207 |
ctttcaatttaacacaatcctttgtttgaattttgttttgtatccc-----attgttttgaaagataat---------------atgtagctatgatatg |
286 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
31040158 |
ctttcaatttaacacaatcctttatttgaattttgttttgtatcccattatattgttttgaaagataatatgtagttgttgtacatgtagctatgatatg |
31040059 |
T |
|
| Q |
287 |
tgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatcataatacacgaaagaaggattaagccgaaaaaaccttagnnnnnnnttact |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
31040058 |
tgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatcataatacacgaaagaaggattaagccggaaaaaccttagaaaaaaattact |
31039959 |
T |
|
| Q |
387 |
agaattacaagggaatgatgaatggtacaactaaattgaagtcgataaaaaacttccgagtcaatgcataaacttgatcactgttttatgggttttctat |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039958 |
agaattacaagggaatgatgaatggtacaactaaattgaagtcgataaaaaacttacgagtcaatgcataaacttgatcactgttttatgggttttctat |
31039859 |
T |
|
| Q |
487 |
catgtctatttttcattaaagtagt |
511 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
31039858 |
catgtgtatttttcattaaagtagt |
31039834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 137 - 367
Target Start/End: Original strand, 31091740 - 31091971
Alignment:
| Q |
137 |
tataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31091740 |
tataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaa |
31091839 |
T |
|
| Q |
237 |
tttt-gttttgtatcccattgttttgaaagataatatgtagctatgatatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatc |
335 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31091840 |
tttttgttttgtatcccattgttttgaaagataatatgtagctatgatatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatc |
31091939 |
T |
|
| Q |
336 |
ataatacacgaaagaaggattaagccgaaaaa |
367 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| |
|
|
| T |
31091940 |
ataatgcacgaaagaaggaataagcccaaaaa |
31091971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 31075786 - 31075722
Alignment:
| Q |
199 |
atttaaatctttcaatttaacacaatcctttgtttgaattttgttttgtatcccattgttttgaa |
263 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31075786 |
atttagatctttcaagttaacacaatccttagtttgaattttgttttgtatcccattgttttgaa |
31075722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 31076296 - 31076206
Alignment:
| Q |
7 |
taaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatctttttgattgtggatttaga |
98 |
Q |
| |
|
|||||||||| ||||||||| ||||||| | |||||||| ||| |||||||| |||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
31076296 |
taaattattccaaattgaacttgttaattggttatttatagcatgttttattttaagcaaaacttctttagc-ttttgatagtggatttaga |
31076206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 31075724 - 31075692
Alignment:
| Q |
399 |
gaatgatgaatggtacaactaaattgaagtcga |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31075724 |
gaatgatgaatggtacaactaaattgaagtcga |
31075692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 31072532 - 31072461
Alignment:
| Q |
11 |
ttattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatctttt |
82 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| ||| ||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
31072532 |
ttattccaaaatgaacatgttaatagattagctattgcaaattttattttaagcataacttgtttatctttt |
31072461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 31073977 - 31073907
Alignment:
| Q |
7 |
taaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttat |
77 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||| ||| |||| |||||| || |||||||| |
|
|
| T |
31073977 |
taaattattccaaaactaacgtgttaatagattagttatggcaagttatattttaagcataagttgtttat |
31073907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 33559716 - 33559641
Alignment:
| Q |
7 |
taaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatctttt |
82 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
33559716 |
taaattattccaaaatgaacgtgttaatagattagctatggcaaattttattttaagcataacttgtttatctttt |
33559641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University