View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3864_high_7 (Length: 321)
Name: NF3864_high_7
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_high_7 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 31040918 - 31040614
Alignment:
| Q |
12 |
atcataggctcactcatatatatgtgcaacactaggctagacattaaatttgatcacattaattattatttattttcgatagtacagtatatggataaat |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31040918 |
atcattggctcactcatatatatgtgcaacactaggctagacattaaatttgatcacattaattattatttattttcgatagta-----tatggataaat |
31040824 |
T |
|
| Q |
112 |
aaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagatgtacacattttaattctcaatttagaacttttca |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040823 |
aaggtgaataatagttggattttgtataaaaacttttttgtagtgaattaaattgatctactagatgtacacattttaattctcaatttagaacttttca |
31040724 |
T |
|
| Q |
212 |
taaaaataaatatgtattaaaacccttcgatctatttttcaataaggtttgtctaacatgtgcatgttaaaggaattaaaattagtaacttttttattga |
311 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040723 |
taaaaataaatatgtattaaaacctttcgatctatttttcaataagatttgtctaacatgtgcatgttaaaggaattaaaattagtaacttttttattga |
31040624 |
T |
|
| Q |
312 |
aaaacaacac |
321 |
Q |
| |
|
|||||||||| |
|
|
| T |
31040623 |
aaaacaacac |
31040614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 31066799 - 31066557
Alignment:
| Q |
12 |
atcataggctcactcatatatat--gtgcaacactaggctagacattaaatttgatcacattaat-tattattt-attttcgatagtacagtatatggat |
107 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||| ||||||| |
|
|
| T |
31066799 |
atcattggctcactcatatatatttgtgcaacactaggctagacattaaatttgatcacattaatatatttttttactttcgatagta-----tatggat |
31066705 |
T |
|
| Q |
108 |
aaataaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagatgt--acacattttaattctcaatttagaac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
31066704 |
gaataaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagatgtaaacatattttaattctcaatttag-ac |
31066606 |
T |
|
| Q |
206 |
ttttcataaaaataaatatgtattaaaacccttcgatctatttttcaat |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||| |||||| |
|
|
| T |
31066605 |
ttttcataaaaataagtatgtattaaaacccttcaatcaattgttcaat |
31066557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 31025604 - 31025572
Alignment:
| Q |
184 |
attttaattctcaatttagaacttttcataaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31025604 |
attttaattctcaatttagaacttttcataaaa |
31025572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 31030962 - 31030918
Alignment:
| Q |
178 |
gtacacattttaattctcaatttagaacttttcataaaaataaat |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
31030962 |
gtacacattataattctcaatttagaacttttaataaaagtaaat |
31030918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 17154648 - 17154692
Alignment:
| Q |
274 |
catgttaaaggaattaaaattagtaacttttttattgaaaaacaa |
318 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||||||||||||| |
|
|
| T |
17154648 |
catgttaaagaaattaaaagtattaatttttttattgaaaaacaa |
17154692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33534916 - 33534876
Alignment:
| Q |
129 |
tattttgtataaaaacttttttgtagtgaattaaattgatc |
169 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
33534916 |
tattttgtttgaaaacatttttgtagtgaattaaattgatc |
33534876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University