View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_high_8 (Length: 305)
Name: NF3864_high_8
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 34580444 - 34580646
Alignment:
| Q |
9 |
gcaattctgaatagccatctccacataaattggatatattccttacccttaaaacaacagcctcaagataaacaatttctgctatccaagaataaataaa |
108 |
Q |
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| T |
34580444 |
gcaattctgaatagccatctccacataaattggatatattccttacccttaaaacaacagcctcaagataaacaatttctgctatccaaaaaaaaaaaaa |
34580543 |
T |
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| Q |
109 |
a--acaattctgatatcaatttgacttgacaaacaccacctgtatatctatgatttaattgacattatttacaaaaatgtcatatgtttgattattcttt |
206 |
Q |
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| T |
34580544 |
aaaacaattctgatatcaatttgacttgacaaaaaccacctgtatatctatgatttaattgacattatttacaaaaatgtcatatatttgattatttttt |
34580643 |
T |
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| Q |
207 |
taa |
209 |
Q |
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||| |
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| T |
34580644 |
taa |
34580646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 34580904 - 34580973
Alignment:
| Q |
220 |
aaaacaaaccaccccaacttgaaacttgaagatcattccaactttctttcacaaagtcttgataacaatc |
289 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34580904 |
aaaataaaccaccccaacttgaaacttgaagatcattccaactttctttcacaaagtcttgataacaatc |
34580973 |
T |
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