View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_low_1 (Length: 701)
Name: NF3864_low_1
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 5055174 - 5054805
Alignment:
| Q |
17 |
agtttacattcctttcgcataaaaatgccaatagagtatgttcttttcagtcaacagtttaactggatccagacacctcgagtgattagtctttgcaatt |
116 |
Q |
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| T |
5055174 |
agtttacattcctttcgcataaaattgccaatagagtatgttcttttcagtcaacaccttaactggatccagacacctcaagtgattagtctttgcaatt |
5055075 |
T |
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| Q |
117 |
acgcgcaagcgaaacttttggcttacaannnnnnn-------gccaatggagtatgtgtttttaagtattgaaaactcaaatcttcatgagagaaccaat |
209 |
Q |
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| T |
5055074 |
acgtgcaagggaaacttttggcttacaatttttttttgttttgccaatagagtatgtgtttttaagtattgaaaactcaaatcttcatgagagaaccaat |
5054975 |
T |
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| Q |
210 |
cctataaaaaataattcaattgatccacaagaaactcatgtggctacacataatcaacctctaaccagcttccaagaaacaannnnnnngattgtacatt |
309 |
Q |
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| T |
5054974 |
cctataaaaaataattcaattgatccacaagaaactcatgtggctacacataatcaacctctaaccagcttccaagaaacaatttttttgattgtacatt |
5054875 |
T |
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| Q |
310 |
atcaataaggaagaggaacacatgagagaaatgagaaaaagggcatgaacaaggagtgtataacaaatgc |
379 |
Q |
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| T |
5054874 |
atcaataaggaagaggaacacatgagagaaatgagaaaaagtgcatgaacaaggagtgtataacaaatgc |
5054805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 5054650 - 5054510
Alignment:
| Q |
540 |
gtgagatgtagtagtgaataagggacccaacgaacccagataatgtggaaaacccaatctttgtaactggagaatatctagtatgtatgtatgtaacaag |
639 |
Q |
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| T |
5054650 |
gtgagatgtagtagtgaataagggacccaacgaacccaaacaatgtggaaaacccaatctttgtaactggagaatatctagtatgta----tgtaacaag |
5054555 |
T |
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| Q |
640 |
tattgtgatgtgatgtgatgagtgagggttagaatatatgtctgatgatg |
689 |
Q |
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| T |
5054554 |
tat-----tgtgatgtgatgagtgagggttagaatatatgtttgatgatg |
5054510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 5054743 - 5054696
Alignment:
| Q |
441 |
ctataaggaacatagatttgagtataagaacagaagacaaggttacca |
488 |
Q |
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| T |
5054743 |
ctataaggaacatagatttgagtataagaacagaagacaaggttacca |
5054696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 5052013 - 5051934
Alignment:
| Q |
53 |
tatgttcttttcagtcaacagtttaactggatcca-gacacctcgagtgattagtctttgcaattacgcgcaagcgaaac |
131 |
Q |
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| T |
5052013 |
tatgttcttttcagtaaacaccctaaatggatccttgacacctcgagtcattagtctttgcaattacacgtaagggaaac |
5051934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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