View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3864_low_14 (Length: 248)

Name: NF3864_low_14
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3864_low_14
NF3864_low_14
[»] chr6 (4 HSPs)
chr6 (1-233)||(31040405-31040637)
chr6 (110-230)||(10887081-10887207)
chr6 (45-75)||(31040374-31040404)
chr6 (177-229)||(29730331-29730383)
[»] chr4 (2 HSPs)
chr4 (165-229)||(2096924-2096988)
chr4 (166-230)||(16667446-16667510)
[»] chr3 (3 HSPs)
chr3 (166-230)||(23320122-23320186)
chr3 (175-230)||(46922833-46922887)
chr3 (109-145)||(12515473-12515509)
[»] chr2 (2 HSPs)
chr2 (171-227)||(9450312-9450368)
chr2 (165-227)||(20566078-20566140)
[»] chr7 (1 HSPs)
chr7 (175-234)||(11680089-11680149)
[»] chr5 (1 HSPs)
chr5 (107-143)||(26376513-26376549)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31040405 - 31040637
Alignment:
Q  1 actatgttgttctaccttttgatcaaacaagcagtgttttcctcaggaaattagttctctcgtgcattatacatttcttctacattactatgttttcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040405 actatgttgttctaccttttgatcaaacaagcagtgttttcctcaggaaattagttctctcgtgcattatacatttcttctacattactatgttttcttt 31040504  T
Q  101 taaaaaatggtttttctataatgtgtaaattttcacatgttaaaagtttcataattttgcaatagaactcgtgtattttatattaagtacataatttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040505 taaaaaatggtttttctataatgtgtaaattttcacatgttaaaagtttcataattttgcaatagaactcgtgtattttatattaagtacataatttttc 31040604  T
Q  201 aataaatcagtgttgtttttcaataaaaaagtt 233  Q
    |||||||||||||||||||||||||||||||||    
T  31040605 aataaatcagtgttgtttttcaataaaaaagtt 31040637  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 10887207 - 10887081
Alignment:
Q  110 gtttttctataatgtgtaaattttcacatgttaa-aagtttca-----taattttgcaatagaactcgtgtattttatattaagtacataatttttcaat 203  Q
    |||||||||| ||||| |||||| |||||||||| |||||| |     ||||||||   | ||||| |||||||||||||||| ||  ||  |||| |||    
T  10887207 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaagtggtaattttgatttggaacttgtgtattttatattaaatatgtagctttttaat 10887108  T
Q  204 aaatcagtgttgtttttcaataaaaaa 230  Q
    |||| ||| ||||||||||||||||||    
T  10887107 aaataagttttgtttttcaataaaaaa 10887081  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 31040374 - 31040404
Alignment:
Q  45 aggaaattagttctctcgtgcattatacatt 75  Q
    |||||||||||||||||||||||||||||||    
T  31040374 aggaaattagttctctcgtgcattatacatt 31040404  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 29730383 - 29730331
Alignment:
Q  177 tttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaa 229  Q
    |||||||||| || |||| |||| ||||||| | |||||||||||||||||||    
T  29730383 tttatattaaatatataactttttaataaataactgttgtttttcaataaaaa 29730331  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 2096988 - 2096924
Alignment:
Q  165 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaa 229  Q
    ||||| ||| |||||||||||| || |||| |||| ||||||| | |||||||||||||||||||    
T  2096988 gaacttgtgcattttatattaaatatataactttttaataaataattgttgtttttcaataaaaa 2096924  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 16667446 - 16667510
Alignment:
Q  166 aactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaa 230  Q
    |||| |||||||||||||||| ||  ||  |||| ||||||| |||||||||||||||| |||||    
T  16667446 aacttgtgtattttatattaaatatgtagctttttaataaataagtgttgtttttcaatgaaaaa 16667510  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 23320186 - 23320122
Alignment:
Q  166 aactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaa 230  Q
    ||||||||||||||||||||| || |||  |||| ||||||| | || |||||||||||||||||    
T  23320186 aactcgtgtattttatattaaatatatatctttttaataaataattgatgtttttcaataaaaaa 23320122  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 46922833 - 46922887
Alignment:
Q  175 attttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaa 230  Q
    ||||||||||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  46922833 attttatattaagtacataattttttaataaatagttgttg-ttttcaataaaaaa 46922887  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 12515473 - 12515509
Alignment:
Q  109 ggtttttctataatgtgtaaattttcacatgttaaaa 145  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  12515473 ggtttttctatcatgtgtaaatttgcacatgttaaaa 12515509  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 9450368 - 9450312
Alignment:
Q  171 gtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaa 227  Q
    ||||||||| |||||| || ||||||||| ||||||| | |||||||||||||||||    
T  9450368 gtgtattttctattaaatatataattttttaataaataattgttgtttttcaataaa 9450312  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 20566078 - 20566140
Alignment:
Q  165 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaa 227  Q
    ||||| ||||||||| |||||| || ||||| ||| ||||||| | |||||||||||||||||    
T  20566078 gaacttgtgtattttttattaaatagataatattttaataaataattgttgtttttcaataaa 20566140  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 11680089 - 11680149
Alignment:
Q  175 attttatattaagtacataatttttcaataaatcagtgttgtttttcaa-taaaaaagttg 234  Q
    |||||||||||| || |||| |||| ||||||| | ||||||||||||| |||||||||||    
T  11680089 attttatattaaatatataactttttaataaataattgttgtttttcaattaaaaaagttg 11680149  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 26376513 - 26376549
Alignment:
Q  107 atggtttttctataatgtgtaaattttcacatgttaa 143  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  26376513 atggtttttctattatgtgtaaatttgcacatgttaa 26376549  T

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