View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3864_low_15 (Length: 236)

Name: NF3864_low_15
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3864_low_15
NF3864_low_15
[»] chr7 (3 HSPs)
chr7 (23-221)||(5568588-5568786)
chr7 (2-221)||(3614970-3615185)
chr7 (2-221)||(35611363-35611575)
[»] scaffold1903 (1 HSPs)
scaffold1903 (1-221)||(473-688)
[»] chr4 (3 HSPs)
chr4 (5-221)||(9981368-9981580)
chr4 (72-221)||(46355866-46356009)
chr4 (84-221)||(20855476-20855607)
[»] chr3 (2 HSPs)
chr3 (2-221)||(33130195-33130416)
chr3 (79-148)||(54670897-54670966)
[»] chr2 (1 HSPs)
chr2 (36-221)||(15480360-15480551)
[»] chr8 (1 HSPs)
chr8 (84-221)||(14735280-14735411)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 5568786 - 5568588
Alignment:
Q  23 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 122  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  5568786 aatgggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagataaaaatg 5568687  T
Q  123 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5568686 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctatttgtt 5568588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 3614970 - 3615185
Alignment:
Q  2 ctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttc 101  Q
    |||||||||||||||||||| |    |||  |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3614970 ctccaacaaattcatcaaatga----gtcactcactggtaactccttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttc 3615065  T
Q  102 atgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattt 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615066 atgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattt 3615165  T
Q  202 catgggtagacctatttgtt 221  Q
     |||||||| ||||||||||    
T  3615166 tatgggtaggcctatttgtt 3615185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 35611575 - 35611363
Alignment:
Q  2 ctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttc 101  Q
    ||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  35611575 ctccaacaaattcatcaaat----gggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttc 35611480  T
Q  102 atgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattt 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||    
T  35611479 atgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaggatgaagttgttgatggtgatggtgaa---gaaggttaaacaattgattt 35611383  T
Q  202 catgggtagacctatttgtt 221  Q
    |||||||| || ||||||||    
T  35611382 catgggtaaacttatttgtt 35611363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 688 - 473
Alignment:
Q  1 cctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttactt 100  Q
    |||||||||||||||||||||    |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  688 cctccaacaaattcatcaaat----gggtcactcactgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactt 593  T
Q  101 catgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatt 200  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  592 catgaaaaacca-ataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaagattaaacaattgatt 494  T
Q  201 tcatgggtagacctatttgtt 221  Q
    |||||||||| | ||||||||    
T  493 tcatgggtaggcatatttgtt 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 9981580 - 9981368
Alignment:
Q  5 caacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatg 104  Q
    |||||||||||||||||    |||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9981580 caacaaattcatcaaat----gggtcactcaccgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatg 9981485  T
Q  105 aaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcat 204  Q
    |||||  | ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981484 aaaaatcacataaaaatgttcatgttaatctcataaaataagaacaggatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcat 9981385  T
Q  205 gggtagacctatttgtt 221  Q
    |||||| ||||||||||    
T  9981384 gggtaggcctatttgtt 9981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 46355866 - 46356009
Alignment:
Q  72 caaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtg 170  Q
    |||| |||||||||| ||||| ||| |||||| |||||  ||||||||||  ||||||||||||| ||||||||||| |||| | |||||||      ||    
T  46355866 caaatctttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgt------tg 46355958  T
Q  171 atggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtt 221  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||| ||||||    
T  46355959 atggtgaagaagatggttaaacaattgattttatgggtaggcctttttgtt 46356009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 20855476 - 20855607
Alignment:
Q  84 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtgatggtgaagaag 182  Q
    ||||||||| ||| |||||| |||||  ||||||||||  |||||||||||||||||||||| || |||| | |||||||      ||||||||||||||    
T  20855476 tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgt------tgatggtgaagaag 20855568  T
Q  183 aaggttaaacaattgatttcatgggtagacctatttgtt 221  Q
    | ||||||||||||||||||||| |||| ||| ||||||    
T  20855569 atggttaaacaattgatttcatgtgtaggcctttttgtt 20855607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 33130195 - 33130416
Alignment:
Q  2 ctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttc 101  Q
    ||||||||||||||||||||    |||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||    
T  33130195 ctccaacaaattcatcaaat----gggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttacttc 33130290  T
Q  102 atgaaaaactagataaaaatgttcatgttaatctcataaaacaa------gaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaat 195  Q
    ||||||||| ||| || ||||||||| |||||||||| ||||||      ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33130291 atgaaaaaccagacaacaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaat 33130390  T
Q  196 tgatttcatgggtagacctatttgtt 221  Q
    |||||| |||||||||||||||||||    
T  33130391 tgattttatgggtagacctatttgtt 33130416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 54670966 - 54670897
Alignment:
Q  79 ttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaa 148  Q
    |||||||||||||  |||||||||| |||||| ||||||||||  |||||||||||||||||||||||||    
T  54670966 ttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaa 54670897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 15480551 - 15480360
Alignment:
Q  36 ctgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatct 135  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||  ||||||||||||||||| ||| || ||||||||||||||| |    
T  15480551 ctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagacaacaatgttcatgttaatgt 15480452  T
Q  136 ca------taaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtt 221  Q
     |      ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  15480451 taatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtagacctatttgtt 15480360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 14735280 - 14735411
Alignment:
Q  84 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatggtgatggtgaagaag 182  Q
    ||||||||| ||| |||||| |||||  |||||||||| ||||||||||||||||||||| |||| |||| | |||||||      ||||| ||||||||    
T  14735280 tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgt------tgatgatgaagaag 14735372  T
Q  183 aaggttaaacaattgatttcatgggtagacctatttgtt 221  Q
    | |||||||||||||||||||||||||| ||| ||||||    
T  14735373 atggttaaacaattgatttcatgggtaggcctttttgtt 14735411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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