View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_low_16 (Length: 235)
Name: NF3864_low_16
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22965521 - 22965297
Alignment:
| Q |
1 |
tgcttgagaatcaaggacagtggtagtttatttaaaaacatccacactactaaacccaatgaggcacctttcataaaagataaaactgtgaatgatttac |
100 |
Q |
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| T |
22965521 |
tgcttgagaatcaagaacaatggtagtttatataaaaacatccacactactaaacccaacgaggcacctttcataaaagataaaactgtgaatgatttac |
22965422 |
T |
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| Q |
101 |
actcaaatcggacaatttttcagaacgtgatacggcgtacttgcaggtagaatggaacacatataatctaatattgcctttccatccacaaggtgagttg |
200 |
Q |
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|||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
22965421 |
actcaaatcggacaatatttcagaacgtgatgcggcgtacgtgcaggtggaatggaacacatataatctaatattgcccttcaatccacaaggtgagttg |
22965322 |
T |
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| Q |
201 |
tccacacctattgaatgaaattact |
225 |
Q |
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||||||||||| ||||||||||||| |
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| T |
22965321 |
tccacacctatcgaatgaaattact |
22965297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 23822872 - 23823096
Alignment:
| Q |
1 |
tgcttgagaatcaaggacagtggtagtttatttaaaaacatccacactactaaacccaatgaggcacctttcataaaagataaaactgtgaatgatttac |
100 |
Q |
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||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23822872 |
tgcttgagaatcaagaacaatggtagtttatataaaaacatccacactactaaacccaacgaggcacctttcataaaagataaaactgtgaatgatttac |
23822971 |
T |
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| Q |
101 |
actcaaatcggacaatttttcagaacgtgatacggcgtacttgcaggtagaatggaacacatataatctaatattgcctttccatccacaaggtgagttg |
200 |
Q |
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|||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
23822972 |
actcaaatcggacaatatttcagaacgtgatgcggcgtacgtgcaggtggaatggaacacatataatctaatattgcccttcaatccacaaggtgagttg |
23823071 |
T |
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| Q |
201 |
tccacacctattgaatgaaattact |
225 |
Q |
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||||||||||| ||||||||||||| |
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| T |
23823072 |
tccacacctatcgaatgaaattact |
23823096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 22960117 - 22959952
Alignment:
| Q |
61 |
gaggcacctttcataaaagataaaactgtgaatgatttacactcaaatcggacaatttttcagaacgtgatacggcgtacttgcaggtagaatggaacac |
160 |
Q |
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||||||||||||||||| || |||| ||||||||||||| ||||||| | |||||| |||| ||||| | ||| |||||| | ||| ||||||| |
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| T |
22960117 |
gaggcacctttcataaaggacaaaattgtgaatgatttaaactcaaagcagacaatatttctgaacgcagtgtggcatacttgtgattggaacggaacac |
22960018 |
T |
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| Q |
161 |
atataatctaatattgcct-ttccatccacaaggtgagttgtccacacctattgaatgaaattact |
225 |
Q |
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|||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22960017 |
atataatccaatatttactattgcatccacaaggtgagttgtccacacctattgaatgaaattact |
22959952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 23828275 - 23828440
Alignment:
| Q |
61 |
gaggcacctttcataaaagataaaactgtgaatgatttacactcaaatcggacaatttttcagaacgtgatacggcgtacttgcaggtagaatggaacac |
160 |
Q |
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||||||||||||||||| || |||| ||||||||||||| ||||||| | |||||| |||| ||||| | ||| |||||| | ||| ||||||| |
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| T |
23828275 |
gaggcacctttcataaaggacaaaattgtgaatgatttaaactcaaagcagacaatatttctgaacgcagtgtggcatacttgtgattggaacggaacac |
23828374 |
T |
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| Q |
161 |
atataatctaatattgcct-ttccatccacaaggtgagttgtccacacctattgaatgaaattact |
225 |
Q |
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|||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828375 |
atataatccaatatttactattgcatccacaaggtgagttgtccacacctattgaatgaaattact |
23828440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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