View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_low_17 (Length: 210)
Name: NF3864_low_17
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_low_17 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 22965779 - 22965609
Alignment:
| Q |
40 |
tatagttttgaaagagcataattgtgttcttcatttgatcaaaggattcaaacccaattgacccatagttgggatgttttatactttcacatattaaata |
139 |
Q |
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| T |
22965779 |
tatagttttgaaagagcataattgtgttcttcatttgatcaaagggttcaaacccaattgacccatagttgagatgttttatactttcacatattaaata |
22965680 |
T |
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| Q |
140 |
ttcaccactttcaaatgcgtgttttgtgggaatctaatatttaaccttccacccacaaggttacttgtgcc |
210 |
Q |
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| T |
22965679 |
ttcaccactttcaaatgcgtgttttgtgggaatctaatatttaaccttccacccacaaggttacttgtgcc |
22965609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 23822614 - 23822784
Alignment:
| Q |
40 |
tatagttttgaaagagcataattgtgttcttcatttgatcaaaggattcaaacccaattgacccatagttgggatgttttatactttcacatattaaata |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23822614 |
tatagttttgaaagagcataattgtgttcttcatttgatcaaagggttcaaacccaattgacccatagttgagatgttttatactttcacatattaaata |
23822713 |
T |
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| Q |
140 |
ttcaccactttcaaatgcgtgttttgtgggaatctaatatttaaccttccacccacaaggttacttgtgcc |
210 |
Q |
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| T |
23822714 |
ttcaccactttcaaatgcgtgttttgtgggaatctaatatttaaccttccacccacaaggttacttgtgcc |
23822784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 22960369 - 22960243
Alignment:
| Q |
64 |
tgttcttcatttgatcaaaggattcaaacccaattgacccatagttgggatgttttatactttcacatattaaatattcaccactttcaaatgcgtgttt |
163 |
Q |
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| T |
22960369 |
tgttcttcatttgataaaatggttcaaacttaattgacccatggttggaatgttttatactttctcatgttaaat-gtcacctcttccaaatgtgtgatt |
22960271 |
T |
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| Q |
164 |
tgtgggaatctaatatttaaccttccac |
191 |
Q |
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||| ||||||||||||||| |||||||| |
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| T |
22960270 |
tgtaggaatctaatatttacccttccac |
22960243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 23828023 - 23828149
Alignment:
| Q |
64 |
tgttcttcatttgatcaaaggattcaaacccaattgacccatagttgggatgttttatactttcacatattaaatattcaccactttcaaatgcgtgttt |
163 |
Q |
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||||||||||||||| ||| | ||||||| ||||||||||| ||||| ||||||||||||||| ||| |||||| ||||| ||| |||||| ||| || |
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| T |
23828023 |
tgttcttcatttgataaaatggttcaaacttaattgacccatggttggaatgttttatactttctcatgttaaat-gtcacctcttccaaatgtgtgatt |
23828121 |
T |
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| Q |
164 |
tgtgggaatctaatatttaaccttccac |
191 |
Q |
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||| ||||||||||||||| |||||||| |
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| T |
23828122 |
tgtaggaatctaatatttacccttccac |
23828149 |
T |
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