View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_low_2 (Length: 696)
Name: NF3864_low_2
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 10 - 655
Target Start/End: Original strand, 39790279 - 39790924
Alignment:
| Q |
10 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
109 |
Q |
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| T |
39790279 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
39790378 |
T |
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| Q |
110 |
gttcttgaggaattatgctcaatttttgtatcaggtaacttctatttccttctgtttgaatnnnnnnnttaagttcttacaacacaatcacttataacta |
209 |
Q |
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| T |
39790379 |
gttcttgaggaattatgctcaatttttgtatcaggtaacttctatttccttctgtttgaataaaaaaattaagttcttacaacacaatcacttataacta |
39790478 |
T |
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| Q |
210 |
agtgcttatacataagttgttnnnnnnnnnnnnaaaatgaatcaaactgttttaataaaagttatcctagagagctaatccnnnnnnnngctgaaaacaa |
309 |
Q |
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| T |
39790479 |
agtgcttatacataagttgtttttatatatataaaaataaatcaaactgttttaataaaagttatcctagagagctaatccaaaaaaaagctgaaaacaa |
39790578 |
T |
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| Q |
310 |
cttatagaatgtttctataagtcaacacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttgatt |
409 |
Q |
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| T |
39790579 |
cttatagaatgtttctataagtcaacacacaaacttgatttgttagtggatatactatagtactgttggcgatgaatacaaaattgatgttgttttgatt |
39790678 |
T |
|
| Q |
410 |
tgacagtgcaaacaagaccttgaaggagcagaggagtattactccagagccatactagcagacccaaatgacggcgaagttttatcacagtatgggaaac |
509 |
Q |
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| T |
39790679 |
tgacagtgcaaacaagaccttgaaggagcagaggagtattactccagagccatactagcagacccaaatgacggcgaagttttatcacagtatgggaaac |
39790778 |
T |
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| Q |
510 |
tagtttgggagctacatcacgacgaagaaagagcctccagttattttgaacgagcagtacaggcctctcctgaagacaggtataatatcatctgcttcat |
609 |
Q |
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| T |
39790779 |
tagtttgggagctacatcacgacgaagaaagagcctccagttattttgaacgagcagtacaggcctctcctgaagacaggtataatatcatctgcttcat |
39790878 |
T |
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| Q |
610 |
tcataacattcaattcagatcattgttgtactttttagatcatgtt |
655 |
Q |
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| T |
39790879 |
tcataacattcaattcagatcattgttgtactctttagatcatgtt |
39790924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 383 - 591
Target Start/End: Complemental strand, 39411188 - 39410978
Alignment:
| Q |
383 |
gaatacaaaattgatgttgttttga--tttgacagtgcaaacaagaccttgaaggagcagaggagtattactccagagccatactagcagacccaaatga |
480 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
39411188 |
gaatgcaaaattgatgttgttttgagttttgacagtgcaaacaagaccgtgaaggagcagaggaatattattccagagccatactagcagatccaaatga |
39411089 |
T |
|
| Q |
481 |
cggcgaagttttatcacagtatgggaaactagtttgggagctacatcacgacgaagaaagagcctccagttattttgaacgagcagtacaggcctctcct |
580 |
Q |
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|| |||||| | ||||||||||| || |||||||||||| |||||| || ||||||||||| ||||| ||||||||||||||||| || || |||||| |
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| T |
39411088 |
tggagaagttctgtcacagtatggaaagctagtttgggagttacatcgtgatgaagaaagagcatccagctattttgaacgagcagtccaagcatctcct |
39410989 |
T |
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| Q |
581 |
gaagacaggta |
591 |
Q |
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|| |||||||| |
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| T |
39410988 |
gatgacaggta |
39410978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 39411506 - 39411372
Alignment:
| Q |
10 |
ataattctatggattctgaaaggaatgatggagataataataatcatggggtggaacaatattacaagaaaatggttcagcaaaatccaggaaatccttt |
109 |
Q |
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||||||| |||| ||||| | ||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |
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| T |
39411506 |
ataattccatgggttctggagggaatgatggagatagtaat---catggggtggaagaatattacaagaaaatggttcaacaaaatccaggaaatccatt |
39411410 |
T |
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| Q |
110 |
gttcttgaggaattatgctcaatttttgtatcaggtaa |
147 |
Q |
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||| |||||||||||||||| ||| |||||||||||| |
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| T |
39411409 |
gtttctgaggaattatgctcagtttctgtatcaggtaa |
39411372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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