View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3864_low_6 (Length: 422)

Name: NF3864_low_6
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3864_low_6
NF3864_low_6
[»] chr1 (2 HSPs)
chr1 (23-188)||(47606629-47606794)
chr1 (28-120)||(47592696-47592788)
[»] scaffold0074 (1 HSPs)
scaffold0074 (23-120)||(49289-49386)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-120)||(6835-6932)
[»] chr6 (3 HSPs)
chr6 (23-97)||(18996096-18996170)
chr6 (23-131)||(20236383-20236491)
chr6 (23-131)||(22206514-22206622)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 47606629 - 47606794
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgatca 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47606629 agctacaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgatca 47606728  T
Q  123 ttttctattcggtatattgacttaattttgaccttcactttcaatatttcctctattctttttatc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47606729 ttttctattcggtatattgacttaattttgaccttcactttcaatatttcctctattctttttatc 47606794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 47592696 - 47592788
Alignment:
Q  28 caacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgat 120  Q
    ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||    
T  47592696 caacaaagaaatcttgtggcattaataggattttgcctagaagagcaagagaagattcttatttatgaatatgtgccaaatgggagccttgat 47592788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 49289 - 49386
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgat 120  Q
    |||| ||||||||||| || |||||||| || ||||||||||| ||||| |||||||| || || ||||| |||| ||| || |||  ||||||||||    
T  49289 agcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaaaagtcttgat 49386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 6835 - 6932
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgat 120  Q
    |||| ||||||||||| || |||||||| || ||||||||||| ||||| |||||||| || || ||||| |||| ||| || |||  ||||||||||    
T  6835 agcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaaaagtcttgat 6932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 18996170 - 18996096
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaat 97  Q
    |||| ||||||||||| || |||||||| || ||||||||||| ||||| |||||||| || || ||||| ||||    
T  18996170 agcttcaacatagaaatctagtggcatttattggtttttgccttgaagaacaagagaaaatacttatttatgaat 18996096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 20236491 - 20236383
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgatca 122  Q
    |||| ||||||||||| || |||||||| || || |||||||| ||||| |||||||| || || ||||| |||| ||| || |||   ||||||||| |    
T  20236491 agcttcaacatagaaatctagtggcatttattggattttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaagagtcttgatta 20236392  T
Q  123 ttttctatt 131  Q
     ||||||||    
T  20236391 ctttctatt 20236383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 22206514 - 22206622
Alignment:
Q  23 agctgcaacatagaaaccttgtggcattgataggtttttgcctagaagagcaagagaagattctcatttacgaatatgtcccaaacggaagtcttgatca 122  Q
    |||| ||||||||||| || |||||||| || || |||||||| ||||| |||||||| || || ||||| |||| ||| || |||   ||||||||| |    
T  22206514 agcttcaacatagaaatctagtggcatttattggattttgccttgaagaacaagagaaaatacttatttatgaatttgtgcccaacaagagtcttgatta 22206613  T
Q  123 ttttctatt 131  Q
     ||||||||    
T  22206614 ctttctatt 22206622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University