View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3864_low_7 (Length: 375)
Name: NF3864_low_7
Description: NF3864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3864_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 44013637 - 44013997
Alignment:
| Q |
1 |
gaagtaaattaaatacttacacagtccaataataggaggcaagtttgcaagctttgcatagctaattccctgcaatttaacaagagacaaaattcagtcn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013637 |
gaagtaaattaaatacttacacagtccaataataggaggcaagtttgcaagctttgcatagctaattccctgcaatttaacaagagacaaaattcagtca |
44013736 |
T |
|
| Q |
101 |
nnnnnntaaaataataagagacaaaactgaaacatcaataaattatgtaaatataagtatgcatgattatatnnnnnnnnnn---ctgagacactatgaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44013737 |
aaaaaataaaataataagagacaaaactgaaacatcaataaattatgtaaatataagtatgcatgattatataaaaaaaataaaactgagacactatgaa |
44013836 |
T |
|
| Q |
198 |
acactaacacaaacacctgacagacacgacagtaaaaccgtaataatttcagaaaataaaattattgaatgtaatcacatgtttcactgacggacactta |
297 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013837 |
acactaacacaaacacctgacagacacgacagtaaaaccgtaataattttagaaaataaaattattgaatgtaatcacatgtttcactgacggacactta |
44013936 |
T |
|
| Q |
298 |
attttagaaaatgagataattgaatatagtcgcgcatttcttggtgtcggacacttgacac |
358 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
44013937 |
attttagaaaatgagataattgaatatagttgcgcatttcttggtgtcggacacttgacac |
44013997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 3173440 - 3173377
Alignment:
| Q |
12 |
aatacttacacagtccaataataggaggcaagtttgcaagctttgcatagctaattccctgcaa |
75 |
Q |
| |
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|||||| ||||| ||||||||| || ||||||||||||||||| ||||| || ||||||||||| |
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| T |
3173440 |
aatactaacacaatccaataattggtggcaagtttgcaagcttggcataactgattccctgcaa |
3173377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 2611131 - 2611090
Alignment:
| Q |
238 |
taataatttcagaaaataaaattattgaatgtaatcacatgt |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
2611131 |
taataatttgagaaaataaaattattgaatgtaaccacatgt |
2611090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 29096953 - 29096995
Alignment:
| Q |
237 |
gtaataatttcagaaaataaaattattgaatgtaatcacatgt |
279 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
29096953 |
gtaataatttaagaaaataaattaattgaatgtaatcacatgt |
29096995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 29449692 - 29449730
Alignment:
| Q |
241 |
taatttcagaaaataaaattattgaatgtaatcacatgt |
279 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
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|
| T |
29449692 |
taatttcagaaaataacataattgaatgtaatcacatgt |
29449730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 26462696 - 26462655
Alignment:
| Q |
238 |
taataatttcagaaaataaaattattgaatgtaatcacatgt |
279 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||| |
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|
| T |
26462696 |
taataatttaagaaaatgaaataattgaatgtaatcacatgt |
26462655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 43609869 - 43609828
Alignment:
| Q |
238 |
taataatttcagaaaataaaattattgaatgtaatcacatgt |
279 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||| |
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|
| T |
43609869 |
taataatttgagaaaataacataattgaatgtaatcacatgt |
43609828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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