View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3865_high_2 (Length: 387)
Name: NF3865_high_2
Description: NF3865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3865_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 43167984 - 43168143
Alignment:
| Q |
200 |
atgatcttaggataattgatgaagatgaaacagaagaattaaacaagaaatgcgaggattttatcaaaaagatgaaagctactttctgttcggattcctg |
299 |
Q |
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| T |
43167984 |
atgatcttaggataattgatgaagatgaaacagaagaattaaacaagaaatgtgaggattttatcaaaaagatgaaagctactttctgttcggattccta |
43168083 |
T |
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| Q |
300 |
agttaagaatatgtgttatcaaaaatcacttgtgcttgtaaattaatttattagtataat |
359 |
Q |
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| T |
43168084 |
agttaagaatatgtgttatcaaaaatcacttgtgcttgtaaattaatttattagtataat |
43168143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 43167796 - 43167915
Alignment:
| Q |
18 |
agtggagccagaaaaagtggttattgaagcagaagaagatgaagaaaaagaagagggaaatgctcttatggaaagtgaatcccaaatagaagaaaatgaa |
117 |
Q |
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| T |
43167796 |
agtggagccagaaaaagtggttattgaagtagaagaagatgaagaaaaagaagagggaaatgctcttatggaaagtgaatcccaaatagaagaaaatgaa |
43167895 |
T |
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| Q |
118 |
gaagtgaagagtttggtgat |
137 |
Q |
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| T |
43167896 |
gaagtgaagagtttggtgat |
43167915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 43154936 - 43154847
Alignment:
| Q |
200 |
atgatcttaggataattgatgaagatgaaacagaagaattaaacaagaaatgcgaggattttatcaaaaagatgaaagctactttctgtt |
289 |
Q |
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| T |
43154936 |
atgatcctatgataattgataaagatgagacagagaaactaaataagaaatgtgaggattttatcaaaaaaatgaaagctactttctgtt |
43154847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 43175221 - 43175144
Alignment:
| Q |
204 |
tcttaggataattgatgaagat---gaaacagaagaattaaacaagaaatgcgaggattttatcaaaaagatgaaagc |
278 |
Q |
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| T |
43175221 |
tcttatgatcattgatgaagatcatgagacacaagaattgaacaagaaatgtgaggattttataaaaaagatgaaagc |
43175144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 43310153 - 43310217
Alignment:
| Q |
210 |
gataattgatgaagatgaaacagaagaattaaacaagaaatgcgaggattttatcaaaaagatgaaagc |
278 |
Q |
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| T |
43310153 |
gataattgatgaagat----cagaggaattgaacaagaaatgtgaggattttattaaaaagatgaaagc |
43310217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 43155030 - 43154992
Alignment:
| Q |
25 |
ccagaaaaagtggttattgaagcagaagaagatgaagaa |
63 |
Q |
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| T |
43155030 |
ccagaaaatgtggttattgaagcagaagaagatgaagaa |
43154992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 43155007 - 43154975
Alignment:
| Q |
105 |
agaagaaaatgaagaagtgaagagtttggtgat |
137 |
Q |
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| T |
43155007 |
agaagaagatgaagaagtgaagagtttggtgat |
43154975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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