View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3865_high_6 (Length: 320)
Name: NF3865_high_6
Description: NF3865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3865_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 40042741 - 40042542
Alignment:
| Q |
1 |
attgtatttatctaaaaactggcaaggtcaagaagagattagtctctaccgctcgacgaaagttcttacatttagcattgttttcgagtgtttgttaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40042741 |
attgtatttatctaaaaactggcaaggtcaagaagagattagtctctaccgctcgacgaaagttcttacatttagcattgttttcgagtgtttgttaggg |
40042642 |
T |
|
| Q |
101 |
atcaatgtggaaccaggtatggtagatacttttgagagagtgttggaaggagttttctcaccagcaattaagtttccaggttctaaattttggagagcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40042641 |
atcaatgtggaaccaggtatggtagatacttttgagagagtgttggaaggagttttctcaccagcaattaagtttccaggttctaaattttggagagcaa |
40042542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University