View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3865_low_3 (Length: 375)
Name: NF3865_low_3
Description: NF3865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3865_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 58 - 360
Target Start/End: Complemental strand, 42939187 - 42938883
Alignment:
| Q |
58 |
aactatctatgagttaattaatacaaagacggagataatggtaatcttatccatgggcattcgtacttgttagatattaataaaattacctaaatctcat |
157 |
Q |
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| T |
42939187 |
aactatctatgagttaattaatacaaaggcggagataatggtaatcttatccatcggcattcgtacttgttagatattaataaaattacccaaatctcat |
42939088 |
T |
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| Q |
158 |
attaatataaatattatccggtcgttcttaagatttaaagtgtcttatacgaaagtatgaatttagcgcctattttattttaaatcacacat--gcacac |
255 |
Q |
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| T |
42939087 |
attaatataaatattatccggtcgtccttaagatttaaagtgtcttatacaaaagtatgaatttgacgcctattttattttaaatcacacatgcgcacac |
42938988 |
T |
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| Q |
256 |
acatatatctctgatccataaccggtagaattcaacaacttggcaaccttaatataggaccatgcttgattttacactctaaatatgctcaaggccacac |
355 |
Q |
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| T |
42938987 |
acatatatctctgatccataaccagtagaattcaacaacttggcaacctgaatataggaccatgcttgattttacactctaaatatgcttaaggccacac |
42938888 |
T |
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| Q |
356 |
tatct |
360 |
Q |
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||||| |
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| T |
42938887 |
tatct |
42938883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 42939264 - 42939197
Alignment:
| Q |
9 |
agcataggtatcttagcagatattcacggattaaagaaatagatatttcaactatctatgagttaatt |
76 |
Q |
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| T |
42939264 |
agcataggtatcttaacagatattcacggattaaagaaatagatatttcaactatctatgagttaatt |
42939197 |
T |
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