View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3865_low_7 (Length: 301)
Name: NF3865_low_7
Description: NF3865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3865_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 5172741 - 5172458
Alignment:
| Q |
2 |
gtttacctattcataaaatagaaacttaaaaagttaccatactctgggttcacatcaactgaaaacttgctatgttttcacattagtagtggcaaacaaa |
101 |
Q |
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| T |
5172741 |
gtttacctattcataaaatagaaacttaaaaagttaccatactctgggttcacatcaactgaaaacttgctatgttttcacgttagtagtggcaaacaaa |
5172642 |
T |
|
| Q |
102 |
tttgtatgttttcacattcttgctcttaaaagcgatgttatttgtaaaacatcaacactaaccgaagacagcatctttgatttaatctacatcaaactcg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5172641 |
tttgtatgttttcacattcttgctcttaaaagcgatgttatttgtaaaacatcaacactaaccgaagacaacatctttgatttaatctacatcaaactcg |
5172542 |
T |
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| Q |
202 |
atttttaactatatcaaataattcatcagaagttgattctttataactaaaaagaaaacgagtatttttcagcaaaagccacaaa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
5172541 |
atttttaactatatcaaataattcatcagaagttgattctttataact-aaaagaaaacgtgtatttttcagcaaaatccacaaa |
5172458 |
T |
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