View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_high_10 (Length: 264)
Name: NF3866_high_10
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_high_10 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 71 - 254
Target Start/End: Original strand, 629 - 816
Alignment:
| Q |
71 |
atattttgtttatacttaagttcgaatgggtatgtaaaagt---caaacgttgtgttgttttggtttagatttgttgtggtcattaaatcatacatattg |
167 |
Q |
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| T |
629 |
atattttgtttatacttaagttcgaataggtatgtaaaagtattcaaacgttgtgttgttctggtttagatttgttgtgattatcaaatcatacatattg |
728 |
T |
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| Q |
168 |
ttatcagttagattgagcgatacatt-ttttaatgtatattatgatttaaaaaatttaaaatatcaagtttgaaatatcgagtctctg |
254 |
Q |
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| T |
729 |
ttatcggttagattgagcgatacattattttaatgtatattatgatttaaaaaatttaaaatatcaagtttgaaaaatggagtctctg |
816 |
T |
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