View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_high_3 (Length: 419)
Name: NF3866_high_3
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 29564180 - 29564490
Alignment:
| Q |
5 |
gaggaggagcagagattttgaaatgacaataataacaacaacgttagacactgtgcnnnnnnngtgactgttatttatttcccaacgtcgagcactgcct |
104 |
Q |
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| T |
29564180 |
gaggaagaacagagattttgaaatgacaataataacaacaacgttagacactgtgctttttgtgtgactgttatttatttcccaacgtcgagcactgcct |
29564279 |
T |
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| Q |
105 |
cttcatgggaatttgaaaaagacttgtctggnnnnnnnnnnnnnnnnnnnnnnnacccaatatgccattcattggtcaaccataaattat-attttaaat |
203 |
Q |
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| T |
29564280 |
cttcatgggaatttgaaaaagacttgtctggtttttgtttttgtttgtctttttacccaatatgccattcattggtcaaccataaattattattttaaat |
29564379 |
T |
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| Q |
204 |
ttagttaat---cattttcactttatttcattctattttggtttacacttagttctac-----attattattactccctctgtctcatatttttccaatt |
295 |
Q |
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| T |
29564380 |
ttagttaataatcattttcactttatttcattctattttggtttacacttagttgtacattatattattattactccctctgtctcatatatttccaatt |
29564479 |
T |
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| Q |
296 |
aatgtgttgaa |
306 |
Q |
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| T |
29564480 |
aatgtgttgaa |
29564490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 29564500 - 29564537
Alignment:
| Q |
353 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
390 |
Q |
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| T |
29564500 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
29564537 |
T |
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