View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_high_4 (Length: 417)
Name: NF3866_high_4
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 30337589 - 30337190
Alignment:
| Q |
1 |
atttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacgcctgaatgggagaaaggttatctatgaaaacgagttg |
100 |
Q |
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| T |
30337589 |
atttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacccctgaatgggagaaaggttatctatgaaaacgagttg |
30337490 |
T |
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| Q |
101 |
ttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggg |
200 |
Q |
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| T |
30337489 |
ttggagagttgtagggaaagtggaaagagagataatgataggattttcacggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggg |
30337390 |
T |
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| Q |
201 |
gtgaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttttcatcggcatcatagttgccgaagttcatctcaacaacgt |
300 |
Q |
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| T |
30337389 |
gtgaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttttcatcggaatcatagttgccgaagttcatctcaacaacgt |
30337290 |
T |
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| Q |
301 |
gtgatcttagtttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggagaagcgagttgt |
400 |
Q |
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| T |
30337289 |
gtgatcttagtttgcgatacttaagaagatgaaagtaggagtaacggcaaacaacgccgggtgggggtaagcgacagaggtcgccggagaagcgagttgt |
30337190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 311 - 397
Target Start/End: Complemental strand, 30325642 - 30325556
Alignment:
| Q |
311 |
tttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggagaagcgagt |
397 |
Q |
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| T |
30325642 |
tttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagt |
30325556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 30325886 - 30325744
Alignment:
| Q |
67 |
gaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattc |
166 |
Q |
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| T |
30325886 |
gaatgggagaagggttgtcaaagaaaataagatgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattc |
30325787 |
T |
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| Q |
167 |
acggaagatgagttttccaaggtagttgaaaggggtgaaaaga |
209 |
Q |
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| T |
30325786 |
acggaaggtgagtaatcggaggtagttgaaaggggtgaagaga |
30325744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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