View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_1 (Length: 493)
Name: NF3866_low_1
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 8776558 - 8776732
Alignment:
| Q |
203 |
tatctatctatcttctacctaaaataaacttgagttattcctatgcaagtactaagctacatatcctaagtttgagttattcttatgcaagtattatgat |
302 |
Q |
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| T |
8776558 |
tatctatttatcttctatccaaaataaacttgagttattcctatccaaatactaagctacatatcctaagtttgagttagttttatgcaagtattatgat |
8776657 |
T |
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| Q |
303 |
gatgtgccacatctaacaaacattttactctttattaaaactaagtgattctttagttacaaaccttttactctt |
377 |
Q |
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| T |
8776658 |
gatgtgacacatctaacaaaccttctcctctttattaaaacttcgtgattcttttgttacaaaccttctactctt |
8776732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 8776376 - 8776459
Alignment:
| Q |
37 |
attaaattaaatacgctgaaatattctgtaattctttgtacattatctgatgaagcaaattgcaagagctaaattaagtgaata |
120 |
Q |
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| T |
8776376 |
attaaactaaatgcactgaaatattctgtgattctttgtatattacctgatgaagcaaattgcaggaacaaaattaagtgaata |
8776459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 8776736 - 8776796
Alignment:
| Q |
418 |
tatactatcattgtcttaaatatatctatctatctatcaatcaataatatgtattcttaagt |
479 |
Q |
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| T |
8776736 |
tatactatcattgtcttaaatatatctatttatctatcaa-caataatatttattcttaagt |
8776796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 24386883 - 24386934
Alignment:
| Q |
67 |
attctttgtacattatctgatgaagcaaattgcaagagctaaattaagtgaa |
118 |
Q |
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| T |
24386883 |
attctttgcacggtatctgatgaagcaaattgcaggagctaaattaagtgaa |
24386934 |
T |
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