View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_14 (Length: 238)
Name: NF3866_low_14
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 4544819 - 4545015
Alignment:
| Q |
28 |
aaaaataaaaggagattgaaatgtataaaaacaatttgtgaacnnnnnnnnnnnnntggaaactttgaatcttaaatatattagtaaacaaatggaaact |
127 |
Q |
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| T |
4544819 |
aaaaataaaaggagattgaaatgtataaaaacaatttgtgaacaaaaaaaaa----tggaaactttgaatcttaaatatattagtaaacaaatggaaact |
4544914 |
T |
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| Q |
128 |
ttatcttctt----nnnnnnntggaaaccttgtaannnnnnnnacatatttttggtactaagtttccatcattaatctccgtcgcagaatcagtgctaca |
223 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4544915 |
ttatcttcttaaaaaaaaaaatggaaaccttgtaattttttttacatatttttggtactaagtttccatcattaatctccgtcgcggaatcagtgctaca |
4545014 |
T |
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