View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_15 (Length: 236)
Name: NF3866_low_15
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 42716555 - 42716391
Alignment:
| Q |
28 |
cagcttcaaacattacaatacataacataaacacatgaaaaagtaccaatcagaaaacaacaaatcctctaagacatgaatcaaatcttaaattcaaaca |
127 |
Q |
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| T |
42716555 |
cagcttcaaacattacaatacataacataaacacatgaaaaagcaccaatcagaaaacaacaaatcctctaagacatgaatcaaatcttaaattcaaact |
42716456 |
T |
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| Q |
128 |
ctatacaacgaatcataacaaaataacaatagaaattgatttttgtttttgtgttaatcataact |
192 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
42716455 |
ctatacaacgaatcataacaaaataacaataaaaattgatttttgtttttatgttaatcataact |
42716391 |
T |
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