View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_16 (Length: 232)
Name: NF3866_low_16
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 2440576 - 2440374
Alignment:
| Q |
14 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2440576 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacactgctcatagttctcaagcctaaacaattga |
2440477 |
T |
|
| Q |
114 |
ttgataatttccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2440476 |
ttgataatttccctgaaatggcaccttcttccctctaacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaagaccaata |
2440377 |
T |
|
| Q |
214 |
tat |
216 |
Q |
| |
|
||| |
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|
| T |
2440376 |
tat |
2440374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 41656528 - 41656725
Alignment:
| Q |
14 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||| ||||||| || |
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| T |
41656528 |
gcacagagtactaagaatctcctgatgatcaatgttagatccctttgcctttcttgcttcaaatgaacactgctcatagttctctagcccaaacaatcga |
41656627 |
T |
|
| Q |
114 |
ttgataattt--ccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggacc |
209 |
Q |
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| T |
41656628 |
ttgataattttctcatgaaatggcaccatcttgcctctgacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggacc |
41656725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 41665289 - 41665493
Alignment:
| Q |
14 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
113 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
41665289 |
gcacagagtgctacgaatctcctgatgatcaatgttagagcccttggtctttcttgcttcaaacgaacactgctcatagttctcaagcccaaacaattga |
41665388 |
T |
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| Q |
114 |
ttgataattt--ccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaa |
211 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||| |||| ||| | |
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| T |
41665389 |
ttgataattttctcatgaaatggcaccttcttccctctcacaaaactagtgaatttcatcagatcattctcatagttcccatcttctttggcagtaccca |
41665488 |
T |
|
| Q |
212 |
tatat |
216 |
Q |
| |
|
||||| |
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|
| T |
41665489 |
tatat |
41665493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 41648438 - 41648634
Alignment:
| Q |
15 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| |||| || ||||| ||||||||||| ||||||||||| |
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| T |
41648438 |
cacagagtactgtgaatctcctgatgatcaatgttagagcccttggtctttcttgtttcaaaggaacactcctcattgttctcaagcccaaacaattgat |
41648537 |
T |
|
| Q |
115 |
tgataattt--ccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggacc |
209 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| |||||| ||||||||| ||| | ||||||||||| ||||||||||||||||| |||||| |
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| T |
41648538 |
tgataattttatcatgaaatggaaccttcttccctctcacaaaactagtgaattgcattagatcattcttattgttcccatcttctttagtaggacc |
41648634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 41716324 - 41716494
Alignment:
| Q |
15 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
114 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||| |||||| | ||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
41716324 |
cacaaagtactacgaatctcctgatgatcaacgttagaacccttggcctttcttgcttcaaatgaacacttctcatagttctcaagcctaaacatttgat |
41716423 |
T |
|
| Q |
115 |
tgataattt--ccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattctta |
183 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
41716424 |
tgataattttatcatgaaatggaaccttcttccctctgacaaaactagtgaatttcattcgatcattctta |
41716494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 41706521 - 41706678
Alignment:
| Q |
15 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
114 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||| |||| |||||||||||||||||||| |||||||| || |
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| T |
41706521 |
cacagagtactacgaatctcctgatgatcaatgttagaacccttggcctttcttgcttcaaaggaacactgctcatagttctcaagcccaaacaattcat |
41706620 |
T |
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| Q |
115 |
tgataatttc--cctgaaatggcaccttcttccctctaacaaaaatagtgaatttcat |
170 |
Q |
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||||||| | | |||||||| || ||||||||||| | |||| ||||||||||||| |
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| T |
41706621 |
tgataatattatcatgaaatggaacattcttccctctgataaaactagtgaatttcat |
41706678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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