View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_17 (Length: 218)
Name: NF3866_low_17
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 9232497 - 9232683
Alignment:
| Q |
16 |
cagagactgtgaaagagaatcttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatg |
115 |
Q |
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| T |
9232497 |
cagagactgtgaaagagaatgttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatg |
9232596 |
T |
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| Q |
116 |
tggaaagggaacaagttgtaaggttgttgatgaagaaaaaggagaagttcaatgtaataagcaattatgtcattatgcttaccaaac |
202 |
Q |
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| T |
9232597 |
tggaaagggaacaagttgtaaggttgttgatgaagaaaaaggagaagttcaatgtaataagcagttatgtcattatgcttaccaaac |
9232683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 9386128 - 9385950
Alignment:
| Q |
24 |
gtgaaagagaatcttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatgtggaaagg |
123 |
Q |
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| T |
9386128 |
gtgaaagagaagatttcttatgatgtgattcatgggatgataattgatggatttgagctttcatggttgcctgtgatttgtgaagatagatgtggaaagg |
9386029 |
T |
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| Q |
124 |
gaacaagttgtaaggttgttgatgaagaaaaaggagaagttcaatgtaataagcaattatgtcattatgcttaccaaac |
202 |
Q |
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| T |
9386028 |
agacaagttgtgaggttgttgatgaagatagtggagaagttcaatgtgataagcgattctgtcattatgtataccaaac |
9385950 |
T |
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