View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_5 (Length: 417)
Name: NF3866_low_5
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 1365577 - 1365957
Alignment:
| Q |
9 |
tataattcttaatagccattaaaaagagaaacatggaggaacccattttccccacaccatcactcgtaggcaagttcttgaaattaacatctagtaagca |
108 |
Q |
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| T |
1365577 |
tataattcttaatagccattaaaaagagaaacatggaggaacccattttccccacaccatcactcgtaggcaagttcttgaaattaacatctagtaagca |
1365676 |
T |
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| Q |
109 |
gatcttacaatattttggtcatcacagtgtcctccacactacacactactcgaagtactctaacaacagaattgttacaagcagtcacaaaaatgaaaat |
208 |
Q |
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| T |
1365677 |
gatcttacaatattttggtcatcaccgtgtcctccaca-------ctactcgaagtactctaacaacagaattgttacaagcagtcacaaaaatgaaaat |
1365769 |
T |
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| Q |
209 |
ctgaaatgttgaatgaagaagattaaattagttgtatttaaaagtaaagttagaatatgagtgttttgaatttgattcgacatattagattttattataa |
308 |
Q |
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| T |
1365770 |
cttaaatgttgaatgaagaagattaaattaattgtatttaaaagtaaagttagaatatgagtgttttgatattgattcaacatataagattttattataa |
1365869 |
T |
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| Q |
309 |
gtaacaaaatgaagttataaattgaactggtaacatgagaaatgatagattctaattatgcgattcttcattccaagtttaaatggga |
396 |
Q |
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| T |
1365870 |
gtaacaaaatgaagttataaattgaactggtaacatgagaaatgatagattctaattatgcgattcttcattccaagtttaaatggga |
1365957 |
T |
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