View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3866_low_8 (Length: 313)
Name: NF3866_low_8
Description: NF3866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3866_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 19713307 - 19713613
Alignment:
| Q |
7 |
ggaggatgagcaagagaagcatcacaatggaagtgacataatactcactcttagtaaagttgaaacatgtttgcactatgatcattatcatgaggaaccc |
106 |
Q |
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| T |
19713307 |
ggaggatgagcaagagaagcatcacaatggaagtgacataatactcactcttagtaaagttgaaacatgtttgcactatgatcattatcatgaggaaccc |
19713406 |
T |
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| Q |
107 |
tgcaaggattaaagacatgtaaaggaaattataaaaagctttggaatcatttggttgttcagctctcttatggtgcttaataactggcataaaaacaaaa |
206 |
Q |
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| T |
19713407 |
tgcaaggattaaagacatgtaaaggaaattataaaaagctttggaatcatttggttgttcagctctcttatggtgcttaataactggcataaaaacaaaa |
19713506 |
T |
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| Q |
207 |
gttacagcagttggtaaccaagccataagcaaaattaaagatttagagtcatttccatagaaggcatagtatagttgagtaatgatagctccactcaaac |
306 |
Q |
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| T |
19713507 |
gttacagcagttggtaaccaagccataagcaaaattaaagatttagagtcatttccatagaaggcatagtatagttgagtaatgatagctccactcaaac |
19713606 |
T |
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| Q |
307 |
caagata |
313 |
Q |
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||||||| |
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| T |
19713607 |
caagata |
19713613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 21777093 - 21776787
Alignment:
| Q |
7 |
ggaggatgagcaagagaagcatcacaatggaagtgacataatactcactcttagtaaagttgaaacatgtttgcactatgatcattatcatgaggaaccc |
106 |
Q |
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|||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
21777093 |
ggaggatgagcaagagaagcattagaatagaagtgacataatactcactcttagtaaagttgaaacatttttgtactatgatcattatcatgaggtaccc |
21776994 |
T |
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| Q |
107 |
tgcaaggattaaagacatgtaaaggaaattataaaaagctttggaatcatttggttgttcagctctcttatggtgcttaataactggcataaaaacaaaa |
206 |
Q |
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|||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||| ||||| | || ||||||||||| ||| ||||||||||| |
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| T |
21776993 |
tgcaaggattaaagtcatgtaaagaaaattatagaaagctttggaatcattcggttgttcaactctcatgtgatgcttaataaccggcgtaaaaacaaaa |
21776894 |
T |
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| Q |
207 |
gttacagcagttggtaaccaagccataagcaaaattaaagatttagagtcatttccatagaaggcatagtatagttgagtaatgatagctccactcaaac |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
21776893 |
gttacaacagttggtaaccaagccataagcaaaattaaagattttgagtcatttccataaaaggcgtagtatagttgagtaatgatagctccactcaaac |
21776794 |
T |
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| Q |
307 |
caagata |
313 |
Q |
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| T |
21776793 |
caagata |
21776787 |
T |
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