View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_high_12 (Length: 346)
Name: NF3867_high_12
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 39308456 - 39308138
Alignment:
| Q |
17 |
aaagccatgattgaccacaatagcttggcatagctcaaaaagggacaattaa-ttaatcaagttgaatgattgaaacgaaaccggtccggatcaacaaaa |
115 |
Q |
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| T |
39308456 |
aaagccatgattgaccacaatagcttggcatagctcaaaaagggataattaaattaatcaagttgaatgattgaaac-----cggtccggatcaacaaaa |
39308362 |
T |
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| Q |
116 |
aatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctattcacacgccttttaacgacaaagccac-gaggaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
39308361 |
aatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctattcacacgccttttaacgacaaagtcacagaggaca |
39308262 |
T |
|
| Q |
215 |
cactcaagatccaaagcgaacaatacctcagnnnnnnnnntgcagcggacatgacttctaaacgaaaacatcaacaaggtcattttgattgaaaaaagaa |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39308261 |
cactcaagatccaaagcgaacaatacctcagaaaaaaaaatgcagcggacatgacttctaaacgaaaacatcaacaaggtcattttgattgaaaaaagaa |
39308162 |
T |
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| Q |
315 |
aatactaagctcttgacctatgct |
338 |
Q |
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|||||||||||||||||| ||||| |
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| T |
39308161 |
aatactaagctcttgaccaatgct |
39308138 |
T |
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