View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3867_high_18 (Length: 267)
Name: NF3867_high_18
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 33520780 - 33520569
Alignment:
| Q |
1 |
ccctcgatccaaacacacccttaaaatataagnnnnnnngttggtatggaaaccaaagcccacgaggcttgcttcataatccaatcatatcaccaccttg |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520780 |
ccctcgatctaaacacactcttaaaatataagaaaaaaagttggtatggaaaccaaagcccacgaggcttgcttcataatccaatcatatcaccaccttg |
33520681 |
T |
|
| Q |
101 |
gtgagcccccgccagatgttgattcacgccctcttgttgttttcctaccaagtaagtccctacacacacatgcactcaaccacaaccaaccatagaaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520680 |
gtgagcccccgccagatgttgattcacgccctcttgttgttttcctaccaagtaagtccctacacacacatgcactcaaccacaaccaaccatagaaccc |
33520581 |
T |
|
| Q |
201 |
acaactttttat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33520580 |
acaactttttat |
33520569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University