View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_high_23 (Length: 240)
Name: NF3867_high_23
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_high_23 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 14185311 - 14185504
Alignment:
| Q |
48 |
tacgatgcaatgaaatcaaagtagaaatggtagtgtaaccnnnnnnnnnnnnngtagaaatggtagtatcctggctattggagaagatattatttcatta |
147 |
Q |
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| T |
14185311 |
tacgatgcaatgaaatcaaagtagaaatggtagtgtaaccaaaaaaaaaaa--gtagaaatggtagtatcatggcaattggagaagatattatttcatta |
14185408 |
T |
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| Q |
148 |
taatgtgtannnnnnnnn-atttgactagaagnnnnnnnnn-ttggaattaattgggatttaatggtat-ttattgaaacggatccttaaacattc |
240 |
Q |
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| T |
14185409 |
tgatgtgtaatttttttttatttgactggaagaaaaaaaaagttggaattaattgggatttaatggtatattattgaaacggatccttaaacattc |
14185504 |
T |
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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 39436521 - 39436576
Alignment:
| Q |
101 |
gtagaaatggtagtatcctggctattggagaagatattatttcattataatgtgta |
156 |
Q |
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| T |
39436521 |
gtagaaatggtagtatcatggctattggagaagatattatttcattatgatgtgta |
39436576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 39436501 - 39436534
Alignment:
| Q |
48 |
tacgatgcaatgaaatcaaagtagaaatggtagt |
81 |
Q |
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| T |
39436501 |
tacgatgcaatgaaatcaaagtagaaatggtagt |
39436534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 39436610 - 39436658
Alignment:
| Q |
191 |
gaattaattgggatttaatggtat-ttattgaaacggatccttaaacat |
238 |
Q |
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| T |
39436610 |
gaattaattgggattgaatggtatattattgaaatggatccttaaacat |
39436658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 3467 - 3517
Alignment:
| Q |
191 |
gaattaattgggatttaatggtat-ttattgaaacggatccttaaacattc |
240 |
Q |
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| T |
3467 |
gaattaattgggattgaatggtatattattgaaacggatccttaaacattc |
3517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 3378 - 3433
Alignment:
| Q |
101 |
gtagaaatggtagtatcctggctattggagaagatattatttcattataatgtgta |
156 |
Q |
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| T |
3378 |
gtagaaatggtaatatcatgactattggagaagatattattttattatgatgtgta |
3433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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