View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_high_25 (Length: 221)
Name: NF3867_high_25
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 39911948 - 39912137
Alignment:
| Q |
18 |
cctatgtgactgttttcattctaatttctgacaatgagatagatatttgtttccacaacagttatatcaaactcattaactcacacaatcggcctatcta |
117 |
Q |
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| T |
39911948 |
cctatgtgactgttttcattctaatttctgacaatgagatagatatttgtttccacaacagttatatcaaactcattaactcacacaatcgacctatctt |
39912047 |
T |
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| Q |
118 |
cccaaaagaccaacagtaatgaaatggattgattatagcacatcttctaatcatcaattccattatttaccgtatgctatgagtagagtat |
208 |
Q |
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| T |
39912048 |
cccaaaagaccaa-agtaatgaaatggattgattatagcacatcttctaatcatcaattccattatttaccgtatgctatgagtagagtat |
39912137 |
T |
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