View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3867_high_6 (Length: 434)

Name: NF3867_high_6
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3867_high_6
NF3867_high_6
[»] chr1 (3 HSPs)
chr1 (15-424)||(2152269-2152678)
chr1 (15-157)||(2164792-2164934)
chr1 (218-333)||(2164587-2164702)
[»] chr2 (3 HSPs)
chr2 (39-149)||(44237170-44237280)
chr2 (39-149)||(44226372-44226482)
chr2 (86-149)||(44214202-44214265)
[»] chr7 (6 HSPs)
chr7 (39-133)||(39551746-39551840)
chr7 (39-150)||(39625184-39625294)
chr7 (86-134)||(39333923-39333971)
chr7 (39-130)||(39359700-39359791)
chr7 (39-150)||(39578116-39578227)
chr7 (86-134)||(39345202-39345250)
[»] chr4 (3 HSPs)
chr4 (72-149)||(2873014-2873091)
chr4 (72-149)||(2901734-2901811)
chr4 (72-142)||(2883216-2883286)
[»] chr3 (1 HSPs)
chr3 (48-142)||(49769490-49769584)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Complemental strand, 2152678 - 2152269
Alignment:
Q  15 acatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152678 acatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaa 2152579  T
Q  115 cactggctttctcagcaagatgtcaaggggttggacaaaattacggtaacgaaggagaaaagaaaaaatcttttaaataaatccaaatattttaaacaga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2152578 cactggctttctcagcaagatgtcaaggggttggacaaaattacggtaacgaatgagaaaagaaaaaatcttttaaataaatccaaatattttaaacaga 2152479  T
Q  215 tcttaatcagagttttgaacttcatcactacgcagaaatgttgactgaactactgagaaaagagaaggagtcaaagattgaaccagatcctgatattaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2152478 tcttaatcagagttttgaacttcatcactacgcagaaatgttgactgaactactgagaaaagagaaggaatcaaagattgaaccagatcctgatattaat 2152379  T
Q  315 gcctatatgaaggtaagaattaaataatctttttggattgacttatctgatcttattaccgacatagtatttgtgaaactgtttgggataacttatggaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152378 gcctatatgaaggtaagaattaaataatctttttggattgacttatctgatcttattaccgacatagtatttgtgaaactgtttgggataacttatggaa 2152279  T
Q  415 aaagcctatg 424  Q
    ||||||||||    
T  2152278 aaagcctatg 2152269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 2164934 - 2164792
Alignment:
Q  15 acatacaatgggaaaggactagaagagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaa 114  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| || |||||||    
T  2164934 acatacaacgggaaaggactagacgagtttgttccacaaagaacatccgcttatataagtcaacatgataatcacattggagaaatgaccgtaagagaaa 2164835  T
Q  115 cactggctttctcagcaagatgtcaaggggttggacaaaatta 157  Q
    | || |||||||||||||||||||||||||||||||| |||||    
T  2164834 ccctagctttctcagcaagatgtcaaggggttggacacaatta 2164792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 2164702 - 2164587
Alignment:
Q  218 taatcagagttttgaacttcatcactacgcagaaatgttgactgaactactgagaaaagagaaggagtcaaagattgaaccagatcctgatattaatgcc 317  Q
    ||||||| |||||||| ||||  |||   |||| ||||||||||||||||| |||| |||||||||  |||||||| |||||||||||||| || |||||    
T  2164702 taatcagggttttgaatttcactacttttcagacatgttgactgaactactaagaagagagaaggaagcaaagattaaaccagatcctgatgttgatgcc 2164603  T
Q  318 tatatgaaggtaagaa 333  Q
    ||||||||||| ||||    
T  2164602 tatatgaaggtgagaa 2164587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 44237280 - 44237170
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 138  Q
    |||||||| || ||||||||  | |||||| | || ||| |||||  ||| ||||||||||||||||||||||||||  ||||||||||||||||||| |    
T  44237280 gagtttgtacctcaaagaactgcggcttatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgcc 44237181  T
Q  139 aaggggttgga 149  Q
    |||| ||||||    
T  44237180 aaggagttgga 44237170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 44226482 - 44226372
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 138  Q
    |||||||| || ||||||||  | || ||| |||| ||| |||||  ||| |||||||||||||||||||| |||||  |||||||||||||||| || |    
T  44226482 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgcc 44226383  T
Q  139 aaggggttgga 149  Q
    |||| ||||||    
T  44226382 aaggagttgga 44226372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 44214265 - 44214202
Alignment:
Q  86 tcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga 149  Q
    |||||||||||||||||||||||| |||||  | |||||||||||||| || ||||| ||||||    
T  44214265 tcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaaggagttgga 44214202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 39551840 - 39551746
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaag 133  Q
    |||||||| || ||||||||  | ||||||||   |||| |||||  ||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  39551840 gagtttgtgcctcaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaag 39551746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 39625294 - 39625184
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 138  Q
    |||||||| |||||||||||  | |||||||| |||||| |||||| |||| |||| ||| ||||||| ||||||||  |||| || |||||||||  ||    
T  39625294 gagtttgtgccacaaagaactgctgcttatgtcagtcaaaatgatactcaccttgg-gaattgactgtcagagaaaccttggccttttcagcaagagttc 39625196  T
Q  139 aaggggttggac 150  Q
    |||| |||||||    
T  39625195 aaggagttggac 39625184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 39333923 - 39333971
Alignment:
Q  86 tcacattggagaaatgactgtgagagaaacactggctttctcagcaaga 134  Q
    ||||||||||||| ||||||| |||||||||||||| ||||| ||||||    
T  39333923 tcacattggagaattgactgttagagaaacactggccttctcggcaaga 39333971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 39359700 - 39359791
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagc 130  Q
    |||||||| || ||||||||  | ||||||||   |||| |||||  ||||||||||||||||||||| ||||||||  |||| ||||||||    
T  39359700 gagtttgtaccccaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggccttctcagc 39359791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 39578227 - 39578116
Alignment:
Q  39 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 138  Q
    |||||||| || ||||||||  | |||||||| |||||| | |||  ||||||||||||| |||| || ||||||||  |||  |||||||||||||  |    
T  39578227 gagtttgtacctcaaagaactgctgcttatgtcagtcaaaacgatcttcacattggagaattgacagttagagaaactttggaattctcagcaagattcc 39578128  T
Q  139 aaggggttggac 150  Q
    |||| |||||||    
T  39578127 aaggtgttggac 39578116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 39345202 - 39345250
Alignment:
Q  86 tcacattggagaaatgactgtgagagaaacactggctttctcagcaaga 134  Q
    ||||||||||||| ||||||| ||||||||| |||| ||||| ||||||    
T  39345202 tcacattggagaattgactgttagagaaacattggccttctcggcaaga 39345250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 2873014 - 2873091
Alignment:
Q  72 agtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga 149  Q
    |||||| |||||  ||| ||||||||||||||||| || |||||| |||||||||||||||| || ||||| ||||||    
T  2873014 agtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggagttgga 2873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 2901811 - 2901734
Alignment:
Q  72 agtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga 149  Q
    |||||| |||||  ||| ||||||||||||||||| || |||||| |||||||||||||||| || ||||| ||||||    
T  2901811 agtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttgga 2901734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 2883216 - 2883286
Alignment:
Q  72 agtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaagg 142  Q
    |||||| |||||  ||| |||||||||||||||||||| |||||  |||||||||||||||| || |||||    
T  2883216 agtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaagg 2883286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 49769490 - 49769584
Alignment:
Q  48 ccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaagg 142  Q
    ||||| ||||||||||||||  ||||||||  ||||   ||||| |||||| |||| |||||||||||| |||| || |||||||| ||||||||    
T  49769490 ccacagagaacatcagcttacataagtcaaactgatttacacataggagaactgacagtgagagaaacattggccttttcagcaaggtgtcaagg 49769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University