View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_high_7 (Length: 395)
Name: NF3867_high_7
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 135 - 395
Target Start/End: Complemental strand, 30078755 - 30078497
Alignment:
| Q |
135 |
gttgaacttataaaaagatcaaaattgttagactctgtgacaagaatttaaaccgtacaacctttatttatgtttcctnnnnnnnntaacctttatttgt |
234 |
Q |
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| T |
30078755 |
gttgaacttataaaaagatcaaaattgttagact--gtgacaagaatttaaaccgtacaacctttatttatgtttcctaaaaaaaacaacctttatttat |
30078658 |
T |
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| Q |
235 |
gtgcttctttcnnnnnnntactttatttatgtgcaaaattgaattaactattatcatttcgctattagattaaaaaacaaaatatcttttgtcaataaat |
334 |
Q |
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| T |
30078657 |
gtgcttctttcaaaaaaatactttatttatgtgcaaaattgaattaactattatcatttcgctattagattaaaaaacaaaatatcttttttcaataaat |
30078558 |
T |
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| Q |
335 |
aactttaataaaggtatgatccagctatgatgaccatatagtgcgctgacccaacaaccct |
395 |
Q |
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| T |
30078557 |
aactttaataaaggtatgatccagctatgatgaccatatagtgcgctgacccaacaaccct |
30078497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 30078927 - 30078857
Alignment:
| Q |
14 |
gtttctactctcttgtgacaccatttctattattttgacaataaaattgatggttaatataattcaaataa |
84 |
Q |
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| T |
30078927 |
gtttctactctcttgtgacaccatttctgttattttgacaataaaattgatggttaatataattcaaataa |
30078857 |
T |
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