View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_1 (Length: 761)
Name: NF3867_low_1
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 737
Target Start/End: Complemental strand, 33338292 - 33337541
Alignment:
| Q |
1 |
taaaactattaaaaaactagtttttt-attataaatcacatataatgtgttaaaattgatcccatcacgttgacaagcacttgttaaaatatattaaggt |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33338292 |
taaaactattaaaaaactagtttttttattataaatcacatataatgtgttaaaattgatcccatcacgttgccaagcacttgttaaaatatattaaggt |
33338193 |
T |
|
| Q |
100 |
acactatcaagaaaatgcttgtttt-ataggatactatatcaagaaattgctgacataagctaannnnnnnccctttaaaacaagccaatcgtgcaaaat |
198 |
Q |
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| T |
33338192 |
gcactatcaagaaaatgcttgtttttataggatataatatcaagaaattgctgacataagctaatttttttccctttaaaacaagccaatcgtgcaaaat |
33338093 |
T |
|
| Q |
199 |
atgtccaagagcctaaattgtttactttctataaacttcaacaaatatttaataagtggttaatttctatgaannnnnnnnacacatctagtcaatcaag |
298 |
Q |
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| T |
33338092 |
atgtccaagagcctaaattgtttactttctataaacttcaacaaatatttaataagtggttaatttctatgaattttttttacacatctattcaatcaaa |
33337993 |
T |
|
| Q |
299 |
tcaaaggaaaaagatatttgtagagactccctnnnnnnnn-gatatttaaagagatattttatgaactaagttaaaaatgtggtgttgtaaaataatttg |
397 |
Q |
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| T |
33337992 |
tcaaaggaaaaagatatttgtagagactccctaaaaaaaaagatatttaaagagatattttatgaactaagttaaaaatgtggtgttgtaaaataatttg |
33337893 |
T |
|
| Q |
398 |
atttggtgcatatgtaaaaaagttttacaacgt-tgtgatacaaattaaacaagtataattttcttacactattaatacccgctcaaaatttatcatact |
496 |
Q |
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| T |
33337892 |
atttggtgcatatgtaaaaaagttttacaacgtctgtgatacaaattaaacaagtataattttcttacactattaatacccgctcaaaatttatcatact |
33337793 |
T |
|
| Q |
497 |
ctcgcattgatcggttgaagacttctatgtt-gcatggcgacttccaaacaatagagtttcaactaaggacaacttggtccaacatgaaattttacactt |
595 |
Q |
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| T |
33337792 |
ctcgcattgatcggttgaagacttctatgtttgcatggcgacttccaaacaatagagtttcaactaaggacaacttggtccaacatgaaattttacactt |
33337693 |
T |
|
| Q |
596 |
tgactctcttttatgtgcatgaggttgtgggaaaaaagtaacggctaatcatgtgaatttttcaatgatctaaattggtttcatttctcctatgtt---- |
691 |
Q |
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| T |
33337692 |
tgactctcttttatgtgcaggaggttgtgggaaaaaagtaacggctaatcatgtgaatttttcaatgatctaaattggtttcatttctcctatgttcttc |
33337593 |
T |
|
| Q |
692 |
------cttcattattagaacatattctctaaaaagattttttcctttgctc |
737 |
Q |
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| T |
33337592 |
cttgttcttcattattagaacatattctctaaaaagattttttcctttgctc |
33337541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 433 - 699
Target Start/End: Original strand, 35128347 - 35128608
Alignment:
| Q |
433 |
tgatacaaattaaacaagtataattttcttacactattaatacccgctcaaaatttatcatactctcgcat---tgatcggttgaagacttctatgtt-g |
528 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||||| |||| ||||| || |||| ||||| |||| | |
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| T |
35128347 |
tgatacaaattaaaccagtataattttcttacacta---atacacgctgaaagtttatcatactcttgcatgcatgatccgtcgaaggcttctgtgtttg |
35128443 |
T |
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| Q |
529 |
catggcgacttccaaacaatagagtttcaactaaggacaacttggtccaacatgaaattttacactttgactctcttttatgtgcatgaggttgtgggaa |
628 |
Q |
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||| |||||| ||| | ||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| | |
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| T |
35128444 |
tgtggtgacttctaaaaa------tttcaacaaaggacaatttggtccaacatggaattttacactttggctctcttttatgtgcaagaggttgtgggga |
35128537 |
T |
|
| Q |
629 |
aaaagtaacggctaatcatgtgaatttttcaatgatctaaattggtttcatttctcctatgttcttcatta |
699 |
Q |
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||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128538 |
aaatgaaacggttaattatgtgaatttttcaatgatctaaattggtttcatttctcctatgttcttcatta |
35128608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 35127812 - 35127915
Alignment:
| Q |
21 |
ttttttattataaatcacatataatgtgttaaaattgatcccatcacgttgacaagcacttgttaaaatatattaaggtacactatcaagaaaatgcttg |
120 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||||| | |||| |
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| T |
35127812 |
ttttttattatcaatcacatataatgtgttaaaattgatgccatcacgttgacaagcactagttaaaatatatttgggtgtactatcaagaaatttcttg |
35127911 |
T |
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| Q |
121 |
tttt |
124 |
Q |
| |
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|||| |
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| T |
35127912 |
tttt |
35127915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 35128148 - 35128226
Alignment:
| Q |
170 |
ccctttaaaacaagccaatcgtgcaaaatatgtccaagagcctaaattgtttactttctataaacttcaacaaatattt |
248 |
Q |
| |
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||||||||||||| | ||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
35128148 |
ccctttaaaacaaccacatcatgcaaaatatgttcaagagccgaaattgtttacttactataaacttcaacaaatattt |
35128226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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