View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_10 (Length: 362)
Name: NF3867_low_10
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 20925833 - 20926159
Alignment:
| Q |
19 |
gattccccatttgaaaagaaaccatgggcccacgaggtttctcagcttcttcatactcatcactattcgcaaccagattatctgattgcgaatcatgtga |
118 |
Q |
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| T |
20925833 |
gattccccatttgaaaagaaaccatgggcccacgaggtttctcagcttcttcatactcatcactattcgcaaccagattatctgattgcgaatcatgtga |
20925932 |
T |
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| Q |
119 |
tgaagactgtggacgaggctgctgcgacggttgtgatggtggtttcttctcctcagccataattttaggttttttgtgacttgccctgtgaccacccaaa |
218 |
Q |
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| T |
20925933 |
tgaagactgtggacgaggctgctgcgacggtggtgatggtggtttcttctcctcagccataattttaggttttttgtgacttgccctgtgaccacccaaa |
20926032 |
T |
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| Q |
219 |
gcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaaccaagttttgtgctagtctcaccaannnnnnnatttccatgactac |
318 |
Q |
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| T |
20926033 |
gcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaaccaagttttgtgctagtctcaccaatttttttatttccatgactac |
20926132 |
T |
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| Q |
319 |
ccttttcccttttattctcatcaacaa |
345 |
Q |
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| T |
20926133 |
cctttacccttttattctcatcaacaa |
20926159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 40689757 - 40689668
Alignment:
| Q |
186 |
ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca |
275 |
Q |
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| T |
40689757 |
ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca |
40689668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 7687872 - 7687946
Alignment:
| Q |
186 |
ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattca |
260 |
Q |
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| T |
7687872 |
ggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca |
7687946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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