View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_13 (Length: 337)
Name: NF3867_low_13
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 39157417 - 39157743
Alignment:
| Q |
11 |
cataggcgacaacattgtatacgggaaggaagatgcatcagaggctgaaataagaaaagctgcaaggcttgcaaatgctcatgactttataaggtacact |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| || |
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| T |
39157417 |
catacgcgacaacattgtatacgggaaggaagatgcatcagaggctgaaataagaaaagccgcacgtcttgcaaatgctcatgactttataaggtacgct |
39157516 |
T |
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| Q |
111 |
ttataatatctctatccctctcaaaggtaagattaatttaaacaaattaattaagtgcttataacataaaagcttatcatataaataatataagttcata |
210 |
Q |
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| T |
39157517 |
ttataatatctctatccctctcaaaggtaagattaatttaaacaaattaattaagtgcttataacataaaagcttatcatataaataatataagttcata |
39157616 |
T |
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| Q |
211 |
gaaaagaaaagtaaagttagtaacaaaaacttgtgccatgcagtggaatgagagaagggtatgatacatactgtggagaaagaggagtgcagctatcagg |
310 |
Q |
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| T |
39157617 |
gaaaagaaaagaaaagttagtaacaaaaacttgtgccatgcagtggaatgagagaagggtatgatacatactgtggagaaagaggagtgcagctatcagg |
39157716 |
T |
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| Q |
311 |
aggacagaagcaaaggatagcaatagc |
337 |
Q |
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| T |
39157717 |
aggacagaagcaaaggatagcaatagc |
39157743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 23785142 - 23785190
Alignment:
| Q |
149 |
taaacaaattaattaagtgcttataacataaaagcttatcatataaata |
197 |
Q |
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| T |
23785142 |
taaacaacttaattaagtgcttatagcataaatgtttatcatataaata |
23785190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 2081251 - 2081214
Alignment:
| Q |
157 |
ttaattaagtgcttataacataaaagcttatcatataa |
194 |
Q |
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| T |
2081251 |
ttaattaagtgcttctaacataaacgcttatcatataa |
2081214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 31442428 - 31442508
Alignment:
| Q |
251 |
cagtggaatgagagaagggtatgatacatactgtggagaaagaggagtgcagctatcaggaggacagaagcaaaggatagc |
331 |
Q |
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| T |
31442428 |
cagtggaatgaatgaagggtatgaaacacactgtggagaaagaggagttcagctatcaggaggacagaaacaaagaatagc |
31442508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 6950225 - 6950270
Alignment:
| Q |
149 |
taaacaaattaattaagtgcttataacataaaagcttatcatataa |
194 |
Q |
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| T |
6950225 |
taaacaacttaattaagtgcttatagcataaacgcttatcatataa |
6950270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 26499602 - 26499646
Alignment:
| Q |
149 |
taaacaaattaattaagtgcttataacataaaagcttatcatata |
193 |
Q |
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| T |
26499602 |
taaacaacttaattaagtgcttaaaacataagcgcttatcatata |
26499646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 14340984 - 14340939
Alignment:
| Q |
149 |
taaacaaattaattaagtgcttataacataaaagcttatcatataa |
194 |
Q |
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| T |
14340984 |
taaacaacttaattaagtgcttataacataaacacttatcatataa |
14340939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 37844895 - 37844862
Alignment:
| Q |
161 |
ttaagtgcttataacataaaagcttatcatataa |
194 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
37844895 |
ttaagtgcttatagcataaaagcttatcatataa |
37844862 |
T |
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