View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3867_low_15 (Length: 309)

Name: NF3867_low_15
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3867_low_15
NF3867_low_15
[»] chr5 (4 HSPs)
chr5 (15-295)||(14185725-14186003)
chr5 (195-297)||(37264162-37264265)
chr5 (15-133)||(14188562-14188681)
chr5 (217-283)||(17810668-17810734)
[»] chr2 (7 HSPs)
chr2 (20-271)||(39436896-39437147)
chr2 (15-231)||(21416157-21416383)
chr2 (15-231)||(2877881-2878107)
chr2 (15-231)||(24256846-24257072)
chr2 (168-231)||(3649122-3649185)
chr2 (15-90)||(39439780-39439855)
chr2 (16-103)||(19815095-19815183)
[»] chr4 (2 HSPs)
chr4 (15-231)||(49715116-49715342)
chr4 (256-296)||(13236758-13236798)
[»] chr1 (5 HSPs)
chr1 (159-295)||(2347355-2347491)
chr1 (15-231)||(16651451-16651677)
chr1 (256-295)||(27345864-27345903)
chr1 (46-99)||(2347231-2347285)
chr1 (168-249)||(2346356-2346437)
[»] chr8 (3 HSPs)
chr8 (16-293)||(1422111-1422399)
chr8 (15-231)||(21107201-21107427)
chr8 (17-237)||(19194643-19194852)
[»] chr6 (5 HSPs)
chr6 (15-133)||(16013086-16013205)
chr6 (15-231)||(24201051-24201278)
chr6 (159-231)||(4214116-4214188)
chr6 (15-91)||(4214264-4214340)
chr6 (207-297)||(16012954-16013044)
[»] scaffold0029 (1 HSPs)
scaffold0029 (15-231)||(130798-131024)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-231)||(308615-308841)
[»] chr3 (8 HSPs)
chr3 (15-231)||(37798630-37798856)
chr3 (17-237)||(57517-57726)
chr3 (15-150)||(10014706-10014841)
chr3 (15-150)||(10115347-10115482)
chr3 (15-150)||(10252451-10252586)
chr3 (17-79)||(10046598-10046660)
chr3 (251-296)||(57721-57766)
chr3 (251-296)||(10046714-10046759)
[»] scaffold0122 (1 HSPs)
scaffold0122 (15-133)||(31383-31502)
[»] scaffold0583 (1 HSPs)
scaffold0583 (15-295)||(7165-7427)
[»] chr7 (1 HSPs)
chr7 (15-295)||(45116709-45117001)
[»] scaffold0281 (1 HSPs)
scaffold0281 (251-296)||(22119-22164)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 14186003 - 14185725
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggccatttcgattgagtatagaga 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14186003 caaaggcgaacgactcgaaccctgatattttagttttctttggaa-gggatatatcagagatcaagtcaatctttgggccatttcgattgagtatagaga 14185905  T
Q  115 tacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttag 214  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  14185904 tacgaaaaggacgcaaagagaaataaatgaa-tagaaagaaaatgagttgcggtgtgaagaaagtgttggtcaataggtctaatttataatacattttag 14185806  T
Q  215 aggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatataat 295  Q
    |||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||| ||| |||||||    
T  14185805 aggacaattatgtaaaacaaccacacttaacacgaccaatcatattcgagctcatgtcttagctattaagcaatatataat 14185725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 37264162 - 37264265
Alignment:
Q  195 taatttataatagatttta-gaggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatata 293  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  37264162 taatttataataaattttttgaggacaattatgtaaaacaaccacatttaactcgatcaatcaaattcaagctcatgtcctagctattaagcaaaatata 37264261  T
Q  294 ataa 297  Q
    ||||    
T  37264262 ataa 37264265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 14188681 - 14188562
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg-ggccatttcgattgagtatagag 113  Q
    ||||||||||||||||||||  ||||| ||  ||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||| | |  ||||    
T  14188681 caaaggcgaacgactcgaacgatgatagtccggttttctttggaaggggatatatcagagatcaagtcaatctttgaggtcatttcgatttaatgaagag 14188582  T
Q  114 atacgaaaaggacgcaaaga 133  Q
    | || ||||| |||||||||    
T  14188581 acacaaaaagtacgcaaaga 14188562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 17810734 - 17810668
Alignment:
Q  217 gacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaa 283  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||    
T  17810734 gacaattatgtaaaacaatcacatttaactcgaccaatcaaattctacctcatgtcttagctattaa 17810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 39437147 - 39436896
Alignment:
Q  20 gcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggccatttcgattgagtatagagatacga 119  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| ||||| |||||||||||||||| ||||| ||||    
T  39437147 gcgaacgactcgaaccctgatattctagttttttttggaaggggatatatcagagctcaagtcaatttttggaccatttcgattgagtagagagaaacga 39437048  T
Q  120 aaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggac 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  39437047 aaaggatgcaaagagaaataaatgaaatagaaagaaaatgagttgtggtgtgaagaaagtgttggtcaattggtctaattgataatagattttaaaggac 39436948  T
Q  220 aattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgt 271  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  39436947 aattatctaaaacaaccacacttaactcgaccaatcaaattcgagctcatgt 39436896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 21416157 - 21416383
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  21416157 caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 21416256  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| || | |||||||    
T  21416257 atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatccactttataa 21416356  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  21416357 tagattttagaggacaattaagtaaaa 21416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 2878107 - 2877881
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||| ||||||||||||||||||||||||  | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  2878107 caaaagcgaacgactcgaaccctgatatttcaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 2878008  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| |||| |||||||    
T  2878007 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa 2877908  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  2877907 tagattttagaggacaattaagtaaaa 2877881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 24257072 - 24256846
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||   | |    ||||    
T  24257072 caaaggcgaacgactcaaaccctaatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgtcatttcagcttaaccgagag 24256973  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaat---------gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    ||| |||||  ||||||||| ||| ||| |||   |||||| ||          |||||| |||||||| |||||||||| ||||||||||| |||||||    
T  24256972 atatgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaataggtctactttataa 24256873  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  24256872 tagattttagaggacaattaagtaaaa 24256846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 3649122 - 3649185
Alignment:
Q  168 tgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaattatgtaaaa 231  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||    
T  3649122 tgtgaagaaagtgttggccaatagatctaatttataatagattttagaggacaattaagtaaaa 3649185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 39439855 - 39439780
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg 90  Q
    ||||||||||||||| ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||| ||||||||    
T  39439855 caaaggcgaacgacttgaaccatgatagtccggttttctttggaaggggatatatcagagatcaagtcaatctttg 39439780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 19815183 - 19815095
Alignment:
Q  16 aaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg-ggccatttcgatt 103  Q
    |||||| ||||| ||||||||||||| || | |||||||||||| ||||||||| |||||||| || |||||||| |||||||||||||    
T  19815183 aaaggcaaacgattcgaaccctgatagtccaattttctttggaaggggatatattagagatcatgtcaatctttgaggccatttcgatt 19815095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 49715116 - 49715342
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  49715116 caaaggcgaacgactcgaaccctgatattccagttttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 49715215  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaat---------gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||| |||         || ||| |||||||| |||||||||| |||||| |||| |||||||    
T  49715216 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaattgcaaaacagaattgtggtgtgaagaaagtgttggccaatagatctactttataa 49715315  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  49715316 tagattttagaggacaattaagtaaaa 49715342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 13236798 - 13236758
Alignment:
Q  256 aaattcgagctcatgtcttagctattaaacaaaatataata 296  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  13236798 aaattcgagctaatgtcttagctattaagcaaactataata 13236758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 2347355 - 2347491
Alignment:
Q  159 gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaattatgtaaaacaatcacacttaactcgatcaatcaaa 258  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| |  |  |||||||| |||| |||    
T  2347355 gagttgtggtgtgaagaaagtgttggccaatatgtctaatttataatagattttagagaacaattaagtaaaacaacctaatctaactcgaacaataaaa 2347454  T
Q  259 ttcgagctcatgtcttagctattaaacaaaatataat 295  Q
    |||||||| ||||||||||||||||  ||||||||||    
T  2347455 ttcgagctaatgtcttagctattaagtaaaatataat 2347491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 16651677 - 16651451
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  16651677 caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 16651578  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| |||| |||||||    
T  16651577 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa 16651478  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  16651477 tagattttagaggacaattaagtaaaa 16651451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 27345864 - 27345903
Alignment:
Q  256 aaattcgagctcatgtcttagctattaaacaaaatataat 295  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  27345864 aaattcgagctaatgtcttagctattaagcaaaatataat 27345903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 2347231 - 2347285
Alignment:
Q  46 agttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttc 99  Q
    |||||||||||||| ||||||||||||| |||||||  |||||||| ||||||||    
T  2347231 agttttctttggaaggggatatatcagaaatcaagtcgatctttggtgccatttc 2347285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 2346356 - 2346437
Alignment:
Q  168 tgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaattatgtaaaacaatcacacttaactcga 249  Q
    |||||| |||||||| | ||| | ||||||||||||||| |||||| |||| |||| ||||||| | ||||| | |||||||    
T  2346356 tgtgaagaaagtgttagccaacatgtctaatttataatatattttataggataattttgtaaaatattcacattcaactcga 2346437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 1422111 - 1422399
Alignment:
Q  16 aaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggcca-tttcgattgagtatagaga 114  Q
    |||| ||||| || ||||| ||||||||| || ||||||||||| | |||||| |||| | |||||  ||||||| | || |||||||| | || |||||    
T  1422111 aaagacgaacaacacgaactctgatattccagctttctttggaaggagatataacagaaaccaagtcgatctttgtgacaatttcgatttaataaagaga 1422210  T
Q  115 tacgaaaaggacgcaaagagaaataaatgaaatagaaaga--------aaat--gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||| | |||||||||| ||| || ||||| | ||| |        ||||  |||||| ||| |||| |||||||||||||||||||||||| ||||     
T  1422211 tacgaagatgacgcaaagaaaaagaattgaaacataaacacaactgcaaaattagagttgtggtttgaagaaagtgttggtcaataggtctaatctatag 1422310  T
Q  205 tagattttagaggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatata 293  Q
    ||||||||||||||||||| | |||||||| |||| ||||||  |||||||  ||| | |||||||||||| ||||||| |||||||||    
T  1422311 tagattttagaggacaattttataaaacaaccacatttaacttaatcaatcttatttgtgctcatgtcttaactattaagcaaaatata 1422399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 21107427 - 21107201
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  21107427 caaaggcgaacgactcaaaccctaatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 21107328  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaat---------gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||| ||          |||||| |||||||| |||||||||| ||||||||||| |||||||    
T  21107327 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaataggtctactttataa 21107228  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  21107227 tagattttagaggacaattaagtaaaa 21107201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 19194852 - 19194643
Alignment:
Q  17 aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttggg-ccatttcgattgagtatagagat 115  Q
    ||||||||||  |||||||||||||||| || ||||||||||| |||||||| |||||||||||| |||||||||| |||||| |||| | || |||||     
T  19194852 aaggcgaacg--tcgaaccctgatattccagctttctttggaaggggatataccagagatcaagtcaatctttggggccattttgatttaatagagagac 19194755  T
Q  116 acgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttaga 215  Q
    ||| ||  || ||||||| ||| ||| |||||| |          |||| ||||||||||||||||||| |||| | |||||||||||||  |||||  |    
T  19194754 acggaattgatgcaaagaaaaagaaacgaaataaa----------gttgtggtgtgaataaagtgttggccaatggatctaatttataatgaatttttta 19194665  T
Q  216 ggacaattatgtaaaacaatca 237  Q
    ||||||||||||||||||||||    
T  19194664 ggacaattatgtaaaacaatca 19194643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 16013205 - 16013086
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttggg-ccatttcgattgagtatagag 113  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| | |  ||||    
T  16013205 caaaggtgaacgactcgaaccctgatattccagttttctttggaatgggatatatcagagatcaagtcaatctttgggaccatttcgatttaatgaagag 16013106  T
Q  114 atacgaaaaggacgcaaaga 133  Q
    | || ||||| |||||||||    
T  16013105 acacaaaaagtacgcaaaga 16013086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 24201051 - 24201278
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  24201051 caaaggcggacgactcgaaccctgatatttcagttttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 24201150  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaaga-aaatg---------agttgcggtgtgaataaagtgttggtcaataggtctaatttata 203  Q
    |||||||||  ||||||||| ||| ||| |||   |||||| || ||         |  || |||||||| |||||||||| |||||| |||||||||||    
T  24201151 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagaaactgtggtgtgaagaaagtgttggccaatagatctaatttata 24201250  T
Q  204 atagattttagaggacaattatgtaaaa 231  Q
    ||||||||||||||||||||| ||||||    
T  24201251 atagattttagaggacaattaagtaaaa 24201278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 4214188 - 4214116
Alignment:
Q  159 gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaattatgtaaaa 231  Q
    |||||| |||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  4214188 gagttgtggtgtgaagaaagtgttggccaatagatctactttataatagattttagaggacaattaagtaaaa 4214116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 4214340 - 4214264
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg 91  Q
    ||||||||||||||||||| |||| ||||| | |||||||||||| ||||||||||||| ||||||| |||||||||    
T  4214340 caaaggcgaacgactcgaatcctgctattccaattttctttggaaggggatatatcagaaatcaagtcaatctttgg 4214264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 16013044 - 16012954
Alignment:
Q  207 gattttagaggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatataataa 297  Q
    ||||||||||||||||||||||||| || |||| |  | |||| ||||||||| | |||| || |||||  |||||| ||| |||||||||    
T  16013044 gattttagaggacaattatgtaaaataaccacattcgattcgaccaatcaaatgcaagcttatatcttaaatattaagcaatatataataa 16012954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 131024 - 130798
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| |||||||||  |||||||   | |    ||||    
T  131024 caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtaccatttcagcttaaccgagag 130925  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| |||| |||||||    
T  130924 atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa 130825  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  130824 tagattttagaggacaattaagtaaaa 130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 308841 - 308615
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| |||||||||  |||||||   | |    ||||    
T  308841 caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtaccatttcagcttaaccgagag 308742  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| |||| |||||||    
T  308741 atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa 308642  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  308641 tagattttagaggacaattaagtaaaa 308615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 37798856 - 37798630
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||   | |    ||||    
T  37798856 caaaggcgaacgactcgaaccctgatatttcaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag 37798757  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa 204  Q
    |||||||||  ||||||||| ||| ||| |||   |||||         |||  |||||| |||||||| |||||||||| |||||| |||| |||||||    
T  37798756 atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa 37798657  T
Q  205 tagattttagaggacaattatgtaaaa 231  Q
    |||||||||||||||||||| ||||||    
T  37798656 tagattttagaggacaattaagtaaaa 37798630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 57517 - 57726
Alignment:
Q  17 aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagagat 115  Q
    ||||||||||  |||||||||||||||  || |||||||| || |||||||| |||||||||||| ||||||| ||||||||| |||| | || |||||     
T  57517 aaggcgaacg--tcgaaccctgatatttcagctttctttgaaaggggatataccagagatcaagtcaatctttggggccattttgatttaatagagagac 57614  T
Q  116 acgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttaga 215  Q
    ||||||  |||||||||| ||| ||| ||||||           ||||| ||||||||||||||||||| |||| | |||||||||||||  |||||  |    
T  57615 acgaaattgacgcaaagaaaaagaaacgaaata----------aagttgtggtgtgaataaagtgttggccaatggatctaatttataatgaatttttta 57704  T
Q  216 ggacaattatgtaaaacaatca 237  Q
    ||||||||||||||||||||||    
T  57705 ggacaattatgtaaaacaatca 57726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 10014706 - 10014841
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag 113  Q
    |||| |||||||||||||||| |||||||  ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | |  ||||    
T  10014706 caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag 10014804  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaataga 150  Q
    | || ||||| ||||||||| ||| |||| |||||||    
T  10014805 acacaaaaagtacgcaaagaaaaagaaataaaataga 10014841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 10115347 - 10115482
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag 113  Q
    |||| |||||||||||||||| |||||||  ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | |  ||||    
T  10115347 caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag 10115445  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaataga 150  Q
    | || ||||| ||||||||| ||| |||| |||||||    
T  10115446 acacaaaaagtacgcaaagaaaaagaaataaaataga 10115482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 10252451 - 10252586
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag 113  Q
    |||| |||||||||||||||| |||||||  ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | |  ||||    
T  10252451 caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag 10252549  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaataga 150  Q
    | || ||||| ||||||||| ||| |||| |||||||    
T  10252550 acacaaaaagtacgcaaagaaaaagaaataaaataga 10252586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 10046598 - 10046660
Alignment:
Q  17 aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaa 79  Q
    ||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  10046598 aaggctaacgactcgaaccctgatattccagctttctttagaaagggatatatcagagatcaa 10046660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 57721 - 57766
Alignment:
Q  251 caatcaaattcgagctcatgtcttagctattaaacaaaatataata 296  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  57721 caatcaaattctacctcatgtcttagctattaagcaaaatataata 57766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 10046714 - 10046759
Alignment:
Q  251 caatcaaattcgagctcatgtcttagctattaaacaaaatataata 296  Q
    ||||||||||| | |||||||||||| |||||||||||||||||||    
T  10046714 caatcaaattctacctcatgtcttagatattaaacaaaatataata 10046759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 31502 - 31383
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag 113  Q
    |||||||||||||||| |||||||||| |  |||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| | |  ||||    
T  31502 caaaggcgaacgactcaaaccctgatagttcagttttctttggaaggggatatatcagagatcaagtcaatctttggggtcatttcgatttaatggagag 31403  T
Q  114 atacgaaaaggacgcaaaga 133  Q
    | |||||||| |||||||||    
T  31402 acacgaaaagtacgcaaaga 31383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 7427 - 7165
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||| |||||||  |||||||| |||||||   || |    ||||    
T  7427 caaaggcgaacgactcgaaccctgatattccagttttctttggaaggggttatattagaaatcaagtcgatctttggtgccattttagtttaactgagag 7328  T
Q  114 atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagatttta 213  Q
    |||||||||  |||||||||          ||||||         |||||| |||||||| ||  |||||| ||| ||||| |||||||||||| |||||    
T  7327 atacgaaaattacgcaaaga----------aaatag---------gagttgtggtgtgaagaatttgttggccaaaaggtcaaatttataatagctttta 7247  T
Q  214 gaggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatataat 295  Q
    |||||||||||  ||||||||  |||  |||||  | |||||||||| |||||||| ||||||||||||| |||||||||||    
T  7246 gaggacaattacataaaacaacgacatgtaacttaaccaatcaaatttgagctcatatcttagctattaagcaaaatataat 7165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 45117001 - 45116709
Alignment:
Q  15 caaaggcgaacgactcgaaccctgatattctagttttctttggaaaggg-atatatcagagatcaagttaatctttgg-gccatttc-gattgagtatag 111  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||| |||| | ||| ||||||| ||||||||| |||||||| | || | |  ||    
T  45117001 caaagacgaatgactcgaactctgatattctagttttctttggaaaggggatatgttagaaatcaagtcaatctttggtgccatttcagcttaactg-ag 45116903  T
Q  112 agatacgaaaaggacgcaaagagaaataaatgaaatagaaaga--------aaat--gagttgcggtgtgaataaagtgttggtcaataggtctaattta 201  Q
    |||||||||||  ||||||||| ||| ||| |||   ||||||        ||||  |||||| |||||||| || ||||||| ||| ||||| ||||||    
T  45116902 agatacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactacaaaataggagttgtggtgtgaagaatgtgttggccaaaaggtcaaattta 45116803  T
Q  202 taatagattttagaggacaattatgtaaaacaatcacacttaactcgatcaatcaaattcgagctcatgtcttagctattaaacaaaatataat 295  Q
    |||||| ||||||| ||||||||  ||||||||  |||  |||||  | ||||||||||  ||||||| ||||| ||||||| |||||||||||    
T  45116802 taatagcttttagaagacaattacataaaacaacgacatgtaacttaaccaatcaaatttaagctcatatcttaactattaagcaaaatataat 45116709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 22164 - 22119
Alignment:
Q  251 caatcaaattcgagctcatgtcttagctattaaacaaaatataata 296  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  22164 caatcaaattctacctcatgtcttagctattaaacaaaatataata 22119  T

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