View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_19 (Length: 266)
Name: NF3867_low_19
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6457551 - 6457302
Alignment:
| Q |
1 |
aagacaatgtcctgaaattctttggactcaagcatatgttttgtagcaaatatttatcccaatattcctcatttcactttcatacaaaacttagatagat |
100 |
Q |
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| T |
6457551 |
aagacaatgtcctgaaattctttggactcaagcatatgttttgtagcaaatatttatcccaatattcctcatttcactttcatacaaaacttagatagat |
6457452 |
T |
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| Q |
101 |
atattaaatcattcacatggaaaatttcctagtaatgtagtagtacactattcattaatgacaaggaaagtttaattaattagtgtttataattaattaa |
200 |
Q |
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| T |
6457451 |
atattaaatcattcacatggaaaatttcctagtaatgtagtagtacactattcattaatgacaaggaaagtttaattaattagtgtttataattaattaa |
6457352 |
T |
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| Q |
201 |
tttaacacttaagaagagataattctcttgatgattcagcatggtctttt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6457351 |
tttaacacttaagaagagataattctcttgatgattcagcatggtctttt |
6457302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6594738 - 6594850
Alignment:
| Q |
1 |
aagacaatgtcctgaaattctttggactcaagcatatgttttgtagcaaatatttatcccaatattcctcatttcactttcatacaaaacttagatagat |
100 |
Q |
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| T |
6594738 |
aagacaatgccctgaaattctttggactcaagcatacgttttgtagcaaatatttatcccaatattccttatttcactttcataccaaacttagatagat |
6594837 |
T |
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| Q |
101 |
atattaaatcatt |
113 |
Q |
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| T |
6594838 |
atattaaatcatt |
6594850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 6594939 - 6595090
Alignment:
| Q |
106 |
aaatcattcacatggaaaatttcctagtaatgtagtagtacactattcattaatgacaaggaaagt---------ttaattaattagtgtttataattaa |
196 |
Q |
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| T |
6594939 |
aaatcattcatatggaaaatttcctagtaatgtagcagt--actattcattaatgacaaggaaattaaagtttaattaattaattagtgtttataattaa |
6595036 |
T |
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| Q |
197 |
ttaatttaacacttaagaagagataattctcttgatgattcagcatggtctttt |
250 |
Q |
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||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
6595037 |
ttaatttgacacttaagatgagctaattctcttgatgattcaacatggtctttt |
6595090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6594675 - 6594719
Alignment:
| Q |
1 |
aagacaatgtcctgaaattctttggactcaagcatatgttttgta |
45 |
Q |
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||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
6594675 |
aagacaatgccctgagattctttggactcaagcatacgttttgta |
6594719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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