View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_3 (Length: 538)
Name: NF3867_low_3
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 146 - 522
Target Start/End: Complemental strand, 1712710 - 1712334
Alignment:
| Q |
146 |
atatcacaatccttttgtgttcatattagacatgatttattaataaaatactaatgacattatttttattaatattctcttatttatggtatatcaactc |
245 |
Q |
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| T |
1712710 |
atatcacaatcctttcgtgttcatattagacatgatttattaataaaatactaatgacattatttttattaatattctcttatttattgtatatcaactc |
1712611 |
T |
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| Q |
246 |
aattaaacttatcctttaacaaatactaatatcaatattttaataaataaaacacattttattattgaaaccgaatatattaagtaatttttcaagaagg |
345 |
Q |
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| T |
1712610 |
aattaaaattatcctttaacaaatactaataacaatattttaataaataaaactcattttattattgaaaccgagtatattaagtaatttttcaagaagg |
1712511 |
T |
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| Q |
346 |
atatattgttttaagagaaatggtaacaaatatcttaataatattagttaagaagtctaaagtgaaattttttattgaaaatgatgcattcaatgtttga |
445 |
Q |
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| T |
1712510 |
atatattgttttaagagaaatggtaacaaatatcttaataatattagttaagaagtccaaagtgaaattttttattgaaaatgatgcattcaatgtttga |
1712411 |
T |
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| Q |
446 |
aactttataaaagaactttttctatatagaaattctacatcaattttctattttaatttagtgtatttgttacatgc |
522 |
Q |
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| T |
1712410 |
aactttataaaagaactttttctatatagaaattctacatcaattttctgttttaatttagtgtatttgttacatgc |
1712334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 1713306 - 1713187
Alignment:
| Q |
10 |
agatgaacttgcaaattccctgagacgggctcttgaatattccaaacaatcggagtatgatggtgtcaattattaattaattgtcttttagattaatttg |
109 |
Q |
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| T |
1713306 |
agatgaacttgcaaattccttgagacgagctcttgaatatttcaaacaatcggagtatgatggtgtcaatcattaattaattgtctcttagattagcttg |
1713207 |
T |
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| Q |
110 |
attgttggcttcgagtctga |
129 |
Q |
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| T |
1713206 |
atcgttggcttcgagtctga |
1713187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 45153493 - 45153580
Alignment:
| Q |
384 |
taatattagttaagaagtctaaagtg-aaattttttattgaaaatgatgcattcaatgt-ttgaaactttataaaagaactttttcta |
469 |
Q |
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| T |
45153493 |
taataatagttaagaattctaaagaataaattttatcttgaaaatggtgcattcaatgcattgaaactttataaagtaactttttcta |
45153580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 45034519 - 45034555
Alignment:
| Q |
279 |
aatattttaataaataaaacacattttattattgaaa |
315 |
Q |
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| T |
45034519 |
aatattttaataaataaaacatattttactattgaaa |
45034555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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