View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_4 (Length: 514)
Name: NF3867_low_4
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Complemental strand, 7089044 - 7088555
Alignment:
| Q |
14 |
ttcacaacatttctgatctcatttaccaatttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgt |
113 |
Q |
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| T |
7089044 |
ttcacaacatttctgatctcatttaccaatttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgt |
7088945 |
T |
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| Q |
114 |
tcaaatcagacctccaagacccttcatcttacctttcttcatggaatgaagatgatatcaatccatgttcatggcaatatgtgaaatgcaatccacaaac |
213 |
Q |
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| T |
7088944 |
tcaaatcagacctccaagacccttcatcttacctttcttcatggaatgaagatgatatcaatccatgttcatggcaatatgtgaaatgcaatccacaaac |
7088845 |
T |
|
| Q |
214 |
tcaaagagtctcagaactttccttagatggtttaggcttatcaggtaaattaggaagaagtcttgaaaaattgcaacatttagtaacattatcactttca |
313 |
Q |
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| T |
7088844 |
tcaaagagtctcagaactttccttagatggtttaggcttatcaggtaaattaggaagaagtcttgaaaaattgcaacatttagtaacattatcactttca |
7088745 |
T |
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| Q |
314 |
cacaacaatttcagtggaactattagtccttcacttacactttccaacactcttcaaaaactaaaccttagtcacaactcattttctggtccattacctc |
413 |
Q |
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| T |
7088744 |
cacaacaatttcagtggaactattagtccttcacttacactttccaacactcttcaaaaactaaaccttagtcacaactcattttctggtccattacctc |
7088645 |
T |
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| Q |
414 |
tttcttttgtcaacattagttcaataaggttcatcgatctctcgcataattcattcacgggacaaatgcctgatagtttctttgagaatt |
503 |
Q |
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| T |
7088644 |
tttcttttgtcaacatgagttcaataaggttcattgatctctcgcataattcgttcgcgggacaaatgcctgatggtttcttcgagaatt |
7088555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 7076191 - 7076091
Alignment:
| Q |
43 |
tttcctaacttgttttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatct |
142 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| |
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| T |
7076191 |
tttcctaacttgttttgcaaacaaggacgtaaccattcagttaaacgacgacgtcctcggcttaattgtgttcaaatcagaccttcataaccctttatct |
7076092 |
T |
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| Q |
143 |
t |
143 |
Q |
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| T |
7076091 |
t |
7076091 |
T |
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