View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_5 (Length: 493)
Name: NF3867_low_5
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 2273802 - 2274260
Alignment:
| Q |
20 |
agatataggtaaacggaccaagtgcatagcgtagatatgcgaattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273802 |
agatataggtaaacggaccaagtgcatagcgtagatatgcgaattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgac |
2273901 |
T |
|
| Q |
120 |
ataatataagattaataatcgctgcggcagtatttgaaacaagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagattaccat |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273902 |
ataatataagattgataatcgctgcggcagtatttgaaacgagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagattaccat |
2274001 |
T |
|
| Q |
220 |
ggtgttttcgttgttgtttttgagagggttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaaca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274002 |
ggtgttttcgttgttgtttttgagagggttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaaca |
2274101 |
T |
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| Q |
320 |
gcaaggactatgagcatcacagcaatgttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaata |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274102 |
gcaaggactatgagcatcacagcaatgttatgttgtaccataaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaata |
2274201 |
T |
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| Q |
420 |
aattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctctg |
478 |
Q |
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| T |
2274202 |
aattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctctg |
2274260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 61 - 477
Target Start/End: Original strand, 2272282 - 2272701
Alignment:
| Q |
61 |
aattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataagattaataatcgctgcggcagtatttgaaaca |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
2272282 |
aattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataaaattgataatcgctgcggcagtatttgaaaca |
2272381 |
T |
|
| Q |
161 |
agtctcacttctatgcttgatattacacttgatagcaccagaatgtataagattaccatggtgttttc---gttgttgtttttgagagggttagggttag |
257 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
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| T |
2272382 |
agtctcacttctatgcttgatattacacttgatagcagcagaatgtataagattaccatggtgttgttattgttgttgtttttgtgagggttagggttag |
2272481 |
T |
|
| Q |
258 |
gattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtac |
357 |
Q |
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| T |
2272482 |
ggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtac |
2272581 |
T |
|
| Q |
358 |
catgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctga |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272582 |
catgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctga |
2272681 |
T |
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| Q |
458 |
tgatctttgtcgatgtctct |
477 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2272682 |
tgatctttgtcgatgtctct |
2272701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 247 - 455
Target Start/End: Complemental strand, 373536 - 373328
Alignment:
| Q |
247 |
gttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatg |
346 |
Q |
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|||||||||||| || ||||||||||||||||| || ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| || |
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| T |
373536 |
gttagggttagggtttgggacacgatgtagtgtcctaccataaccaagtgctatttgaaataagaaaacaacagcaatgagtatgagcatcacagcagtg |
373437 |
T |
|
| Q |
347 |
ttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctct |
446 |
Q |
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| ||||| |||||||||| |||||||||||||| |||||||||||| | | |||||||||| ||||| ||||| |||| || ||||||| | | ||| |
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| T |
373436 |
tcatgttccgccatgaatttcccaaaatatgatgacatattcattgcaccgatcataatcaataccaaggataaactcattgtagtcacaactattttct |
373337 |
T |
|
| Q |
447 |
taaacctct |
455 |
Q |
| |
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||||||||| |
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| T |
373336 |
taaacctct |
373328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 373611 - 373550
Alignment:
| Q |
154 |
tgaaacaagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagatta |
215 |
Q |
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||||||||| ||| |||| ||||||||||||||||||||||| | |||| |||||| ||||| |
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|
| T |
373611 |
tgaaacaagactcgcttcaatgcttgatattacacttgataggagcagagtgtatatgatta |
373550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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