View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_8 (Length: 379)
Name: NF3867_low_8
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 49871103 - 49870744
Alignment:
| Q |
1 |
acaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaagctcgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
49871103 |
acaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatc |
49871004 |
T |
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| Q |
101 |
gttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871003 |
gttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttca |
49870904 |
T |
|
| Q |
201 |
ccggggaacccgaagtacttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttctccaaggttgttatcgtggattctctcattga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870903 |
ccggggaacccgaagttcttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttctccaaggttgttatcgtggattctctcattga |
49870804 |
T |
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| Q |
301 |
tggtctctttgtaccagagggttatatgccatggatgggaaatcttttcaaggagacatg |
360 |
Q |
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| T |
49870803 |
tggtctctttgtaccagagggttacatgccatggatgggaaatcttttcaaggagacatg |
49870744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 49865166 - 49864807
Alignment:
| Q |
1 |
acaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaagctcgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49865166 |
acaatccaaaagacaattctaccgcgactgcactattagcggaacaattgactttgtctttggtgatgctgttggagttttccaaaactgcaagctcgtc |
49865067 |
T |
|
| Q |
101 |
gttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttca |
200 |
Q |
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| T |
49865066 |
gttagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgtcatttca |
49864967 |
T |
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| Q |
201 |
ccggggaacccgaagtacttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttctccaaggttgttatcgtggattctctcattga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49864966 |
ccggggaacccgaagttcttaccatgcaacccaagatagcttatttgggaagaccatggagaaatttctccaaggttgttatcgtggattctctcattga |
49864867 |
T |
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| Q |
301 |
tggtctctttgtaccagagggttatatgccatggatgggaaatcttttcaaggagacatg |
360 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864866 |
tggcctctttgtaccagagggttatatgccatggatgggaaatcttttcaaggagacatg |
49864807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 13967589 - 13967668
Alignment:
| Q |
14 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
93 |
Q |
| |
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||||||||||| |||||| |||| | || |||||||||||||| ||||| || || |||||||||||||||| ||||| |
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| T |
13967589 |
caattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaa |
13967668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 37150614 - 37150693
Alignment:
| Q |
14 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
93 |
Q |
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||||||||||| |||||||||||| | || || ||||||||||||||||| |||||| ||| |||||||||||||| |
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| T |
37150614 |
caattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattccaaaactgcaa |
37150693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 37159439 - 37159518
Alignment:
| Q |
14 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
93 |
Q |
| |
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||||||||||| |||||||||||| | || || ||||||||||||||||| |||||| ||| |||||||||||||| |
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| T |
37159439 |
caattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattccaaaactgcaa |
37159518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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