View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3867_low_9 (Length: 374)
Name: NF3867_low_9
Description: NF3867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3867_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 40970377 - 40970670
Alignment:
| Q |
14 |
cagttgttgctattgtttgtttcagcgacctac--ctacatgtgtgattattatgatggtaagccttattgaacaccaatcgacgagatacgaatttaag |
111 |
Q |
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| T |
40970377 |
cagttgttgctattgtttgtttcagcgacctacatctacatgtgtgattattatgatggta-gccttattgaacaccaatcgtcgatatacgaatttaag |
40970475 |
T |
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| Q |
112 |
gatacttgtaaacaaactttgatgttaaagtcagtacgagaccgaacaagtattaagtcttttaagt-----atgtgggtctttatcaatttaaaacaat |
206 |
Q |
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| T |
40970476 |
gatacttttaaacaaactttgatgttaaagtcagtacgagaccgaacaagtattaagtcttttaagtgtcgagtatgggtctttatcaatctaaaacaat |
40970575 |
T |
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| Q |
207 |
atgtattcaattcaagtatgtccattaacaaatataattatgaactatgttagaggacttcaacataat--tatataggctaaagttaacattta |
299 |
Q |
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| T |
40970576 |
atgtattcaattcaagtatgtccattaacaaatataattatgaactatgttagaggacttcaacataattatatataggctaaagttaacattta |
40970670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 40970731 - 40970802
Alignment:
| Q |
299 |
attcatagtatgtattttgagctcacacatgtcatgcttttttattgacacgttctacccctc-tgtgctcc |
369 |
Q |
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| T |
40970731 |
attcatagtatgtattttgagctcacacatgtcatgcttttttattgacacgttctacccctcatgtgctcc |
40970802 |
T |
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