View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3868_high_1 (Length: 438)
Name: NF3868_high_1
Description: NF3868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3868_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 11194038 - 11194475
Alignment:
| Q |
1 |
tgaacttcaagttcaaaagcatttgattggtgctgcttacaatcttgctattcacaccccttcaaaacttcaaactttacttacactagatggtaatcct |
100 |
Q |
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|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
11194038 |
tgaacttcaagttcaagctcgtttgattgttgctgcttacaatcttgctattcacaccccttcaaaacttcaaactttactttcacttcatggtaatcct |
11194137 |
T |
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| Q |
101 |
aatgaacaagattccatagttgataatgctaagtgtcttcatgctcttatcgcacctttttgttcaccccacatgaatttttcagctgaactagctgcta |
200 |
Q |
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| T |
11194138 |
aatgatcaagattccatagttgataatgctaagtttcttcattctcttatctcacctttttgttcaccccacatgaatttttcagctgaactagctgcta |
11194237 |
T |
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| Q |
201 |
aaatcattgccaaagaaagattgaactctttttgcttgatggagccttatacccaaaagggtcctcaaagatccattaaggcttatggaatttaccaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194238 |
aaatcattgccaaagaaagattgaactctttttgcttgatggagccttattcccaaaagggtcctcaaagatccattaaggcttatggaatttaccaaaa |
11194337 |
T |
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| Q |
301 |
agctacnnnnnnnaaccatggttgtatccctaatgcatgcaggtttgattatgtggaaagtggtgaacctggtgatgaacataatactgatattgttatt |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194338 |
agctactttttttaaccatggttgtatccctaatgcatgcaggtttgattatgtggaaagtggtgaacctggtgatgaacataatactgatattgttatt |
11194437 |
T |
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| Q |
401 |
agtttgattaaggatgttggttttggaagtgagatttg |
438 |
Q |
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| T |
11194438 |
aggttgattaaggatgttggtgttggaagtgagatttg |
11194475 |
T |
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