View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3868_high_1_N (Length: 605)
Name: NF3868_high_1_N
Description: NF3868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3868_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 25 - 582
Target Start/End: Original strand, 7105100 - 7105656
Alignment:
| Q |
25 |
tcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaatgaaggtcagttatatcagctcc |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7105100 |
tcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaatggaggtcagttatatcagctcc |
7105199 |
T |
|
| Q |
125 |
caaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaagg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105200 |
caaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaagg |
7105299 |
T |
|
| Q |
225 |
attcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagtgcatgaatgccaacctctctaccatg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7105300 |
attcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagt-catgaatgccaacctctctaccatg |
7105398 |
T |
|
| Q |
325 |
aaatactagaattttatgaaggtttaaatatcaaagtggagccgcaagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggaga |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105399 |
aaatactagaattttatgaaggtttaaatatcaaagtggagccgcaagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggaga |
7105498 |
T |
|
| Q |
425 |
aaagaatgtatgtgttaatgtgttaaaactttcatttgaagagtattgttacttctgtctttttgttgtcctaacttcggtttgttattttacttttcac |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7105499 |
aaagaatgtatgtgttaatgtgttaaaactttcatttgaagagtattgttacttctgtctttttgttgtcctaacttcggtttgttattttgcttttcac |
7105598 |
T |
|
| Q |
525 |
tatcgaacatagggtcattaccatttacctgaaactagagggctctgcttgtcagaag |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7105599 |
tatcgaacatagggtcattaccatttacctgaaactagagggctctgcttgtcagaag |
7105656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 25 - 580
Target Start/End: Original strand, 7092873 - 7093434
Alignment:
| Q |
25 |
tcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaatgaaggtcagttatatcagctcc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7092873 |
tcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaatggaggtcagttatatcagctcc |
7092972 |
T |
|
| Q |
125 |
caaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaagg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7092973 |
caaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaagg |
7093072 |
T |
|
| Q |
225 |
attcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagtgcatgaatgccaacctctctaccatg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7093073 |
attcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagt-catgaatgccaacctctctaccatg |
7093171 |
T |
|
| Q |
325 |
aaatactagaattttatgaaggtttaaatatcaaagtggagccgcaagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggaga |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| || |||| |||||||| |||||||| |
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|
| T |
7093172 |
aaatactagaattttatgaaggtttaaatatgaaagtggagcagcaagttcctatgcttttggtggaaagacaagcactaaatgaggccatggagggaga |
7093271 |
T |
|
| Q |
425 |
aaagaatgtatgtgttaatgtgttaaaactttcatttgaagagtattgtta------------cttctgtctttttgttgtcctaac-ttcggtttgtta |
511 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||| || |||| ||||||||||| |||| ||||||| | | |||||| |
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| T |
7093272 |
aaagaatg--tgtgttaatgtgttaaa--cttcatttgcagaggatcgttactttcttccctccttctgtctttctgttatcctaacgtaagagttgtta |
7093367 |
T |
|
| Q |
512 |
ttttacttttcactatcgaacatagggtcattaccatttacctgaaactagagggctctgcttgtcaga |
580 |
Q |
| |
|
||| | |||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
7093368 |
ctttgc--ttcactattgaatgtagggtcatcaccatttacctgaaactagaggactctgcttgtcaga |
7093434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 202 - 434
Target Start/End: Complemental strand, 33407268 - 33407037
Alignment:
| Q |
202 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagtgca |
301 |
Q |
| |
|
|||| |||| |||||| ||| ||| |||| ||||| || |||||||| ||||||||||| |||||||||||||| || ||||| |||||||| | | || |
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|
| T |
33407268 |
tttccaatcagtgcagtcaacggacacaaagtatctgttgcttgatgacggtcgaaagctgtgtcttgagtgtctcgattcggctattatggatact-ca |
33407170 |
T |
|
| Q |
302 |
tgaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatcaaagtggagccgcaagttcctatacttttggtggaaagacaaaca |
401 |
Q |
| |
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|||||||||||||||||| | |||||||| |||||||||||||||||| |||| ||| | |||| |||| ||||||| |||||||| || |||||| || |
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| T |
33407169 |
tgaatgccaacctctctatcttgaaatacaagaattttatgaaggtttgcatatgaaaatagagcagcaaattcctatgcttttggttgagagacaagca |
33407070 |
T |
|
| Q |
402 |
ataaaagaggccatagagggagaaaagaatgta |
434 |
Q |
| |
|
| || || || || ||||| |||||||||||| |
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|
| T |
33407069 |
ctgaatgaagcgatggagggcgaaaagaatgta |
33407037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 33407454 - 33407361
Alignment:
| Q |
26 |
catcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaatgaaggtcagttatatca |
119 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||| |||| ||| | |||||||||||||||||||| | |||||| |||||||||| |||| |
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| T |
33407454 |
catcctttctggctacaaaaatactgtccatcacacgagcgcgatggtactcctcgttgttgtagctgtcagagaatggaggtcagttacatca |
33407361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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