View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3868_high_2 (Length: 427)
Name: NF3868_high_2
Description: NF3868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3868_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 28 - 404
Target Start/End: Original strand, 25883680 - 25884056
Alignment:
| Q |
28 |
ttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacagga |
127 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25883680 |
ttttccacccccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacagga |
25883779 |
T |
|
| Q |
128 |
tgcttcccagccatgcttccagtatttgtaattcccaatgttacagaaatggacatggttttacatgnnnnnnngcctaactctgaaacaagtttgtaac |
227 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |
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| T |
25883780 |
tgtttcccagccatgcttccagtatttgtaattcccaatgttacagaaattgacatggttttacatgctttcttccctaactccgaaacaagtttgtaac |
25883879 |
T |
|
| Q |
228 |
ggattgtttcagagttttcgagtatcaaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaatggagttgtaggaataatttgagta |
327 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25883880 |
ggattgtttcagagttttcgagtatcgaatgagtggttgattggttgatgtgaatgttgttgtttttgacggaaatgaagttgtaggaataatttgagta |
25883979 |
T |
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| Q |
328 |
gcttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883980 |
gcttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25884056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 404
Target Start/End: Original strand, 25905015 - 25905390
Alignment:
| Q |
29 |
tttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggat |
128 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905015 |
tttccacctccttccaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggat |
25905114 |
T |
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| Q |
129 |
gcttcccagccatgcttccagtatttgtaattcccaatgttacagaaatggacatggttttacatgnnnnnnngcctaactctgaaacaagtttgtaacg |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25905115 |
gcttcccagccatgcttccagtatttgtaattcccaatgtgacagaaattgacatggttttacatgtttcttcgcctaactctgaaacaagtttgtaatt |
25905214 |
T |
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| Q |
229 |
gattgtttcagagttttcgagtatcaaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaatggagttgtaggaataatttgagtag |
328 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
25905215 |
gattgtttcagagttttcgagtattgaataagtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagtag |
25905314 |
T |
|
| Q |
329 |
cttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905315 |
cttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25905390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 28 - 402
Target Start/End: Original strand, 25923857 - 25924231
Alignment:
| Q |
28 |
ttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacagga |
127 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923857 |
ttttcctcctccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacagga |
25923956 |
T |
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| Q |
128 |
tgcttcccagccatgcttccagtatttgtaattcccaatgttacagaaatggacatggttttacatgnnnnnnngcctaactctgaaacaagtttgtaac |
227 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
25923957 |
tgtttcccagccatgcttccagtatttgtaattcccaatgtgacagaaattgacatggttttacatgtttcttcacctaactctgaaacaagtttgtaat |
25924056 |
T |
|
| Q |
228 |
ggattgtttcagagttttcgagtatcaaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaatggagttgtaggaataatttgagta |
327 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25924057 |
agattgtttcagagttttcgagtatcgaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagta |
25924156 |
T |
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| Q |
328 |
gcttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
402 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924157 |
gcttagaccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
25924231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 404
Target Start/End: Complemental strand, 25961412 - 25961036
Alignment:
| Q |
28 |
ttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacagga |
127 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25961412 |
ttttccacccccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacagga |
25961313 |
T |
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| Q |
128 |
tgcttcccagccatgcttccagtatttgtaattcccaatgttacagaaatggacatggttttacatgnnnnnnngcctaactctgaaacaagtttgtaac |
227 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
25961312 |
tgtttcccagccatgcttccagtatttgtaattcccaatgttacagaaattgacatggttttacatgctttcttccctaactccgaaacaagtttgtaat |
25961213 |
T |
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| Q |
228 |
ggattgtttcagagttttcgagtatcaaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaatggagttgtaggaataatttgagta |
327 |
Q |
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||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
25961212 |
ggattgtttgagatttttcgagtattgaataagtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagta |
25961113 |
T |
|
| Q |
328 |
gcttaggccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
404 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961112 |
gcttagaccatagccgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25961036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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