View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3868_high_3 (Length: 340)
Name: NF3868_high_3
Description: NF3868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3868_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 38267868 - 38268205
Alignment:
| Q |
1 |
aaaagtatcaaaactataatggaagtgaatattttactctactgtctagaaaacgatggacatgtttaagtgtcattttcaatagcatgaaagttagtga |
100 |
Q |
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| T |
38267868 |
aaaagtatcaaaactataatggaagtgaatattttactctactgtctagaaaacgatggacatgtttaagtgtcattttcaatagcatgaaagttagtga |
38267967 |
T |
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| Q |
101 |
caggagnnnnnnnntcatatatcaagtaaaaaagattctgcaatttgnnnnnnnnnataggtaaagtaactaaatctgtttctgttcctagcaataatga |
200 |
Q |
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| T |
38267968 |
caggagaaaaaaaatcatatatcaagtaaaaaagattctgcaatttgtttttttt-ataggtaaagtaactaaatctgtttctgttcctagcaataatga |
38268066 |
T |
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| Q |
201 |
aagtaaaatgaaccaataaatatatgtgatggattgtatatactatatagaaattcatcaatgatgttacagtgtataaatgaaagagtatgtaaaaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38268067 |
aagtaaaatgaaccaataaatatatgtgatggattgtatatactatatagaaattcatcaatgatgttacagtgtataaatgaaagattatgtaaaaaga |
38268166 |
T |
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| Q |
301 |
aaacaacaaacaaatccttattcacctatgctactccac |
339 |
Q |
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|||||||||||||||||||||||||| || |||| |||| |
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| T |
38268167 |
aaacaacaaacaaatccttattcaccaattctaccccac |
38268205 |
T |
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