View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3868_low_2 (Length: 230)
Name: NF3868_low_2
Description: NF3868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3868_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 15464608 - 15464408
Alignment:
| Q |
18 |
actaacagctcgtattatttgtgacagttggaaactactaaaacatttcagtcccttttattatatattttccaatgagatatacttttaagtgttaaca |
117 |
Q |
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| T |
15464608 |
actaacagctcgtattatttgtgacagttggaaactactaaaacatttcagtcccttttcttatatattttccaatgagatatacttttaagtgttgaca |
15464509 |
T |
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| Q |
118 |
aatttaatg-ttaagaataatcacaattatattttttaggctggttataactatattaaatgagaatagtcaaagttgaaactctagctatatgtagttt |
216 |
Q |
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| T |
15464508 |
aatttaatgttttagaataatcaatagtacattttttaggctggttataactatattaaatgagaatagtcaaagttgaaactctagctatatatagttt |
15464409 |
T |
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| Q |
217 |
c |
217 |
Q |
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| T |
15464408 |
c |
15464408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 15447510 - 15447373
Alignment:
| Q |
62 |
atttcagtcccttttattatatattttccaatgagatatacttttaagtgttaacaaatttaatgttaagaataatcacaattatattttttaggctggt |
161 |
Q |
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| T |
15447510 |
atttcagtcccatttcttatatattttccaatgagatat-ctttcaagtgtta-caaaattaatactaagaataatcataattatatttttatgactg-t |
15447414 |
T |
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| Q |
162 |
tataactatattaaatgagaatagtcaaagttgaaactcta |
202 |
Q |
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| T |
15447413 |
tataactatatgaaacgagaatagtcaaagttgaaactcta |
15447373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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