View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3869_high_1 (Length: 437)
Name: NF3869_high_1
Description: NF3869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3869_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 32780871 - 32781278
Alignment:
| Q |
13 |
aatattcagtgtacaaagattaaattaattcaaagcaatcaagctgtatcacttgtaatagataactggtttattggaattcaaatcccacatgcctcct |
112 |
Q |
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| T |
32780871 |
aatattcagtgtacaaagattaaattaattcaaagcaatcaagctgtatcacttgtaatagataactggtttattggaattcaaatcccacatgcctcct |
32780970 |
T |
|
| Q |
113 |
tccttaagatactcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaatccaagaagttgagaagtggatgactcttcttgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32780971 |
tccttaagatactcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaatccaagaagttgagaagtggatgactcttcttgc |
32781070 |
T |
|
| Q |
213 |
tactattactattagccttctttgtagggtttctttttaggtttatttccccaaaagttgaacctagagtcatttttcttgaagtatttgttgctctaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32781071 |
tactattactattagccttctttgtagggtttctttttaggtttatttccccaaaagttgaacctagagtcatttttcttgaagtattggttgctctaga |
32781170 |
T |
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| Q |
313 |
aggcatgcttgtacttctcttgaactccccatgcaagagtgttgtggttgcagattctttccctaatctctcatacctcccatttccaagccctatccga |
412 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
32781171 |
aggcatgcttgtacttctcttgaactcctcatgcaagagtgttgtggttgcagattctttccctaatctctcatacctcccatttccaaggcctctccga |
32781270 |
T |
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| Q |
413 |
gttgtcat |
420 |
Q |
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| T |
32781271 |
gttgtcat |
32781278 |
T |
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Back To:
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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 7996463 - 7996341
Alignment:
| Q |
80 |
ggtttattggaattcaaatcccacatgcctccttccttaagatactcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaat |
179 |
Q |
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|||||||| ||||| |||||||||||||||||||||| | |||||||| ||| |||||||||||||| | | ||||| |||||| || || ||||||| |
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| T |
7996463 |
ggtttatttgaattagaatcccacatgcctccttccttcaaatactcaacatatcttgcaaattcaggctttgatgttgctttcttctttctccgaaaat |
7996364 |
T |
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| Q |
180 |
ccaagaagttgagaagtggatga |
202 |
Q |
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| T |
7996363 |
caaagaaattgagaagtggatga |
7996341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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